Gene detail

Detail information of GWHGAAZE001317

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011090146.1	1.104E-157	PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Sesamum indicum]
Swissprot	tr\|Q9FPS3\|UBP24_ARATH	5E-120	Ubiquitin carboxyl-terminal hydrolase 24
trEMBL	tr\|A0A022RAI3\|A0A022RAI3_ERYGU	3E-150	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT4G30890.3	3E-91	ubiquitin-specific protease 24

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	31778125	31782579	-
GWHAAZE00000001	mRNA	31778125	31782579	-
GWHAAZE00000001	exon	31778125	31778316	-
GWHAAZE00000001	exon	31779543	31779719	-
GWHAAZE00000001	exon	31780625	31780770	-
GWHAAZE00000001	exon	31782258	31782579	-
GWHAAZE00000001	CDS	31782258	31782579	-
GWHAAZE00000001	CDS	31780625	31780770	-
GWHAAZE00000001	CDS	31779543	31779719	-
GWHAAZE00000001	CDS	31778125	31778316	-

Transcript Sequence
>GWHTAAZE001321 ATGTTTTTATCTCTGTGTAGTCCTATCTTCTGCTTTGTGGCTGAATTCCTTCTGTTTTACAGGCAAGAAGATGCTCAGGAGTTCCTTAGTTTTGTCATGCACCAGATGCATGAAGAATTGCTTAAAATTGATTCTCAATTTCCAAATGGGAATGGGGGAAAAGCCTCTTTGGTTTCATCAACGAATGATGAGGATGACGATGATAATTGGGAGACCGTTGGCCCAAAGAACAAAACTGCAATTACACGGACACAGAGCTTCATTCCTTCAAAGTTAAGTGTGATTTTTGGTGGTCAATTAAGAAGCGTTGTCAAGGCAAGAGGTAATAAAGCTTCAGCAACTATACAACCATTTCTTTTACTCCACCTTAATATTTGTCCAGAGCAAGTCTGTACAATAGAGGACGCACTTCGTATGTTTTCAGCACCAGAGACACTTGAAGGATATCGGGCATCTGCAGCTGGAAAAGCTGAGGTGGTGAGTGCTAGCAAGTCTGTGAAAATATCGGAGCTTCCAGAGATAATGATATTACACCTGGTGCGTTTTAGCTATGGAAGCCAAGGAAGCACCAAATTGCATAAACCTGTTCGCTTTCCTCTTGAGCTAGTTCTGGGACGTGAACTGCTTGTTTCTCCATCTTCCAAGGGTCGAAGGTACGAACTCGTAGCAACAATCACGCACCACGGGAGGGATCCTTCAAGGGGGCATTACACTGCGGATAGCCGCCACTGTTCGTCCAGCAAGTGGATGCGCTATGACGATGCCTTCGTTTCTCCCATTCCTACAAGTAAGGTGCTGCATGACCAAGCTTATGTTCTCTTCTATAGACGCTTATAG

Network for GWHGAAZE001317

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	15	275	6.10E-38

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
K11841	USP10, UBP3	Mitophagy - yeast	map04139

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.598
	SRR3591706	second leaf	2.765
	SRR3591707	mature leaf	3.878
	SRR3591708	Shoot apex	8.187
	SRR3591709	Stem	20.175
	SRR3591710	White floral bud	5.888
	SRR3591711	White flower	5.947
	SRR3591712	Green floral bud	7.925
	SRR3591713	Yellow flower	3.662
SRP173429	SRR8316895	Juvenile bud stage	5.652
	SRR8316896	Juvenile bud stage	5.947
	SRR8316897	Juvenile bud stage	1.977
	SRR8316894	Third green stage	2.824
	SRR8316900	Third green stage	5.919
	SRR8316901	Third green stage	4.154
	SRR8316898	Complete white stage	0.766
	SRR8316899	Complete white stage	5.453
	SRR8316903	Complete white stage	2.264
	SRR8316902	Silver flowering stage	0.285
	SRR8316904	Silver flowering stage	0.595
	SRR8316905	Silver flowering stage	0.252
	SRR8316906	Gold flowering stage	0.821
	SRR8316907	Gold flowering stage	0.693
	SRR8316908	Gold flowering stage	0.663
SRP132670	SRR6706286	Control	6.669
	SRR6706287	Light intensity 50%	6.561
	SRR6706288	Light intensity 20%	6.269
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.163
	CNS0095593	Slightly white alabastrum(diploid) 2	6.838
	CNS0095594	Slightly white alabastrum(diploid) 3	8.936
	CNS0095595	Whole white alabastrum(diploid) 2	9.661
	CNS0095596	Whole white alabastrum(diploid) 3	6.601
	CNS0095597	Whole white alabastrum(diploid) 4	7.297
	CNS0095598	Silvery flower (diploied) 1	11.224
	CNS0095599	Silvery flower (diploied) 2	6.487
	CNS0095600	Silvery flower (diploied) 3	2.557
	CNS0095601	Golden flower (diploid) 1	8.144
	CNS0095602	Golden flower (diploid) 2	4.800
	CNS0095603	Golden flower (diploid) 3	4.674
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.989
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.623
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.104
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.413
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.740
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.560
	CNS0095610	Silvery flower (tetraploid) 1	1.213
	CNS0095611	Silvery flower (tetraploid) 2	3.208
	CNS0095612	Silvery flower (tetraploid) 3	3.839
	CNS0095613	Golden flower (tetraploid) 1	0.487
	CNS0095614	Golden flower (tetraploid) 2	1.219
	CNS0095615	Golden flower (tetraploid) 3	0.333
CRA001975	CRR073297	Stem 1	9.946
	CRR073298	Stem 2	7.023
	CRR073299	Stem 3	6.803
	CRR073300	Leaf 1	5.383
	CRR073301	Leaf 2	7.819
	CRR073302	Leaf 3	3.720
	CRR073303	Juvenile bud 1	4.300
	CRR073304	Juvenile bud 2	1.543
	CRR073305	Juvenile bud 3	6.394
	CRR073306	Third green 1	0.102
	CRR073307	Third green 2	0.619
	CRR073308	Third green 3	0.433
	CRR073309	Second white 1	1.126
	CRR073310	Second white 2	1.680
	CRR073311	Second white 3	0.618
	CRR073312	Silver flowering 1	0.568
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.303
	CRR073315	Gold flowering 1	4.595
	CRR073316	Gold flowering 2	5.799
	CRR073317	Gold flowering 3	6.313
	CRR073318	Tawny withering 1	15.179
	CRR073319	Tawny withering 2	18.373
	CRR073320	Tawny withering 3	15.913