Gene detail

Detail information of GWHGAAZE001320

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009794988.1	0	PREDICTED: F-box protein At2g26850-like [Nicotiana sylvestris]
Swissprot	tr\|Q8RY82\|FB121_ARATH	3E-153	F-box protein At2g32560
trEMBL	tr\|F6HA97\|F6HA97_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49089.1}
TAIR10	AT2G32560.1	2E-120	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	31881529	31885778	+
GWHAAZE00000001	mRNA	31881529	31885778	+
GWHAAZE00000001	exon	31881529	31882197	+
GWHAAZE00000001	exon	31882496	31882575	+
GWHAAZE00000001	exon	31883057	31883235	+
GWHAAZE00000001	exon	31883789	31883863	+
GWHAAZE00000001	exon	31885372	31885547	+
GWHAAZE00000001	exon	31885701	31885778	+
GWHAAZE00000001	CDS	31881529	31882197	+
GWHAAZE00000001	CDS	31882496	31882575	+
GWHAAZE00000001	CDS	31883057	31883235	+
GWHAAZE00000001	CDS	31883789	31883863	+
GWHAAZE00000001	CDS	31885372	31885547	+
GWHAAZE00000001	CDS	31885701	31885778	+

Transcript Sequence
>GWHTAAZE001324 ATGCTTCTCTTCTTGATCACTTGCCTTTTCTTGATCCTATTCTATAAGTCTCTCTCTCTCAAGCCACTAGAACCATGGGTCTATGAGCTGAGATTGCTATCACCCTCGCTTTGGAAAGATTCTTTATCATTCTTTCCAATCACCAAATCAGTAATTCAAAGACTTTCAGGTGGGTTCACCTTGATTCCCACTGAAATGTCACTAAGAAAGAAGACCCTTTGTTCCAATGTTGAAAATATGGAGCTAAGTGAAGATATCTCTGTGTTGGATTTGCCTGAATTGGCACTCGAATGCATTCTCGAGAAGCTTCCGCCTGATGGGCTTTGCAGCATGGCGGGTGTTTGTAGTTCTTTGAGGGAAAGATGTACGAGTGATCACTTGTGGGAGAGGCACATGAGGCAGAAATGGGGTAGAATTATTGGTCCGGCTGCCCACCGTAAATGGCAGAGGCATATGTCCTTGATAAACGAATCGAGTTTCCTCGAGCCTAGTCAGGCAAGAGGCTTGATGGGTTATCTTTCTCGTCTTTGGCCTCTATTGGTAGTTAAATCTAAAACTTGCAAGAATAGTGAGAGGAAGAGTTCTCTCCCAGTTGATTCCACCATGTCCTTTTATCTTGCGCTTGAGACGGGCAAGTTCTGGTTTCCTGCTCAGGTCTATAACCGCGAGAATGGGCACGTGGGATTTATGTTGTCCTGCTATGACGCAGAGCTTAGCTACAACTCGCAGAGTGACACTTTCCAGGCCAGGTACCCGCCACATGGAAGGAGGGCAATTGCGATAGAGAGTGGCGTTTCATGGGATAGGCTAAGGGCACCTCCCATGGATACTTCCGCTCACGATCTTCATATCTCTGACTGTTTGGATCACTTGCTCCCTGGTGATCACATTGAGATCCAGTGGAGAAGGAACAAAGAATTTCCATACGGTTGGTGGTATGGCGTTATTGGGCACATGGAATCATGTGATCGGAATGCCGGTTACTGCCGCTGCCATGAAAGTGAGTCTGTGGTGTTGGAGTTCAACCAGTACTCTCCTGGTTCGCGGTGGAGATGCACCACCATCAACCGCAAGGACCACCGCGAAGAAGGAAATGAGGCCGATGGGTTTTACGGCGGAATCAGGAAACTTCAAAACAATGATGAGATTTCCCCGTGGAAGCGGCTATGGCCAACTGATAAAGAGATTGGCCGGAGCTCAAACAGCCAAAGTACAACTTTGAATAGCATTCTCCCTTTATCTCAAGTACAACCTTGA

Network for GWHGAAZE001320

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	88	132	2.80E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.955
	SRR3591706	second leaf	32.255
	SRR3591707	mature leaf	47.807
	SRR3591708	Shoot apex	21.136
	SRR3591709	Stem	54.280
	SRR3591710	White floral bud	214.354
	SRR3591711	White flower	35.562
	SRR3591712	Green floral bud	131.045
	SRR3591713	Yellow flower	43.941
SRP173429	SRR8316895	Juvenile bud stage	6.072
	SRR8316896	Juvenile bud stage	11.110
	SRR8316897	Juvenile bud stage	4.401
	SRR8316894	Third green stage	7.765
	SRR8316900	Third green stage	57.814
	SRR8316901	Third green stage	47.592
	SRR8316898	Complete white stage	20.524
	SRR8316899	Complete white stage	18.489
	SRR8316903	Complete white stage	34.389
	SRR8316902	Silver flowering stage	23.104
	SRR8316904	Silver flowering stage	36.839
	SRR8316905	Silver flowering stage	21.182
	SRR8316906	Gold flowering stage	59.035
	SRR8316907	Gold flowering stage	48.132
	SRR8316908	Gold flowering stage	45.520
SRP132670	SRR6706286	Control	36.473
	SRR6706287	Light intensity 50%	43.112
	SRR6706288	Light intensity 20%	38.861
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.041
	CNS0095593	Slightly white alabastrum(diploid) 2	31.279
	CNS0095594	Slightly white alabastrum(diploid) 3	26.447
	CNS0095595	Whole white alabastrum(diploid) 2	135.080
	CNS0095596	Whole white alabastrum(diploid) 3	151.482
	CNS0095597	Whole white alabastrum(diploid) 4	200.949
	CNS0095598	Silvery flower (diploied) 1	28.197
	CNS0095599	Silvery flower (diploied) 2	40.742
	CNS0095600	Silvery flower (diploied) 3	44.946
	CNS0095601	Golden flower (diploid) 1	26.068
	CNS0095602	Golden flower (diploid) 2	39.107
	CNS0095603	Golden flower (diploid) 3	35.657
	CNS0095604	Slightly white alabastrum(tetraploid) 1	75.303
	CNS0095605	Slightly white alabastrum(tetraploid) 2	76.374
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.358
	CNS0095607	Whole white alabastrum(tetraploid) 1	217.720
	CNS0095608	Whole white alabastrum(tetraploid) 2	274.065
	CNS0095609	Whole white alabastrum(tetraploid) 3	116.384
	CNS0095610	Silvery flower (tetraploid) 1	24.655
	CNS0095611	Silvery flower (tetraploid) 2	51.286
	CNS0095612	Silvery flower (tetraploid) 3	110.498
	CNS0095613	Golden flower (tetraploid) 1	27.945
	CNS0095614	Golden flower (tetraploid) 2	22.551
	CNS0095615	Golden flower (tetraploid) 3	63.934
CRA001975	CRR073297	Stem 1	26.816
	CRR073298	Stem 2	24.914
	CRR073299	Stem 3	23.185
	CRR073300	Leaf 1	96.876
	CRR073301	Leaf 2	65.265
	CRR073302	Leaf 3	44.505
	CRR073303	Juvenile bud 1	97.409
	CRR073304	Juvenile bud 2	86.460
	CRR073305	Juvenile bud 3	34.305
	CRR073306	Third green 1	151.005
	CRR073307	Third green 2	123.969
	CRR073308	Third green 3	131.264
	CRR073309	Second white 1	82.728
	CRR073310	Second white 2	92.964
	CRR073311	Second white 3	93.190
	CRR073312	Silver flowering 1	99.885
	CRR073313	Silver flowering 2	93.179
	CRR073314	Silver flowering 3	91.483
	CRR073315	Gold flowering 1	56.235
	CRR073316	Gold flowering 2	47.435
	CRR073317	Gold flowering 3	45.907
	CRR073318	Tawny withering 1	64.584
	CRR073319	Tawny withering 2	54.904
	CRR073320	Tawny withering 3	44.525