Gene detail

Detail information of GWHGAAZE001330

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009591425.1	PREDICTED: AP-4 complex subunit mu [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SB50\|AP4M_ARATH	AP-4 complex subunit mu
trEMBL	tr\|K4BU61\|K4BU61_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g076230.2.1}
TAIR10	AT4G24550.2	Clathrin adaptor complexes medium subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	32132438	32142796	+
GWHAAZE00000001	mRNA	32132438	32142796	+
GWHAAZE00000001	exon	32132438	32132530	+
GWHAAZE00000001	exon	32134660	32134863	+
GWHAAZE00000001	exon	32135234	32135350	+
GWHAAZE00000001	exon	32135480	32135608	+
GWHAAZE00000001	exon	32136331	32136457	+
GWHAAZE00000001	exon	32137921	32138024	+
GWHAAZE00000001	exon	32138266	32138370	+
GWHAAZE00000001	exon	32138728	32138972	+
GWHAAZE00000001	exon	32141180	32141306	+
GWHAAZE00000001	exon	32141661	32141721	+
GWHAAZE00000001	exon	32142098	32142171	+
GWHAAZE00000001	exon	32142545	32142796	+
GWHAAZE00000001	CDS	32132438	32132530	+
GWHAAZE00000001	CDS	32134660	32134863	+
GWHAAZE00000001	CDS	32135234	32135350	+
GWHAAZE00000001	CDS	32135480	32135608	+
GWHAAZE00000001	CDS	32136331	32136457	+
GWHAAZE00000001	CDS	32137921	32138024	+
GWHAAZE00000001	CDS	32138266	32138370	+
GWHAAZE00000001	CDS	32138728	32138972	+
GWHAAZE00000001	CDS	32141180	32141306	+
GWHAAZE00000001	CDS	32141661	32141721	+
GWHAAZE00000001	CDS	32142098	32142171	+
GWHAAZE00000001	CDS	32142545	32142643	+
GWHAAZE00000001	three_prime_UTR	32142644	32142796	+

Transcript Sequence
>GWHTAAZE001334 CGTGGTGATGTGCAAAAAGGAAGTGCTGAGATATTTTTCCGTAAAGTTAAGTTTTGGAAAGAGGACGGCGAAGAAGAAGCACCACCTGTCTTTAACGTGGACGGTGTAAACTACTTCCATGTGAAGGTGGTTGGATTACTTTTTGTTGCAACCACGAGAGCAAATGTGTCCCCTTCTCTTGTCTTGGAACTTTTACAGAGGGTTGCACGTGTCATCAAAGATTACCTTGGTGTACTCAATGAAGATTCACTACGGAAAAATTTCGTGCTTGTGTATGAATTGCTTGATGAAGTCATTGATTTTGGTTATGTGCAAACAACATCCACTGAAGTTTTAAAATCTTCTGTATTCAATGAGCCAATTGTGGTTGATGCTGCACGGTTGCCACCCCTTGGTCCTGCTGCCATCTTTATGCAAGGTACCAAAAGAATGCCAGGGACAGCAGTTACAAAATCTGTTGTTGCTAATGAACCTGGGGGCAAGAAAAGGGAGGAAATTTTTGTGGACATAATTGAGAAAATAAGTGTTACATTCAGCTCCAGCGGATATATACTAACTTCTGAGATTGATGGTACCATTCAAATGAAGAGTTACCTATCTGGCAATCCTGAAATCAGATTAGCTCTTAACGAAGACCTGAGCATAGGAAGAGGCGGGAGATCAATCTATGATTATGGTGGCTCTTCTGGGTCAGGGTCAGTGATATTAGATGATTGTAATTTCCATGAATCTGTGCATCTCGATAGTTTTGACATGGATAGAACTTTGACCCTGGTGCCTCCAGATGGTGAATTTCCTGTTATGAATTACCGTATGACACAGGAATTTAAGCCTCCTTTTCGTGTTAACACACTGATCGAGGAAGCTGGATCACTTAAGGCTGAAGTGATCCTGAAGATACGGGCTGAATTTCCGCCAAGCATCACTGCAAACACAGTCGTGATACAGATGCCACTGCCAACATATACAAACAGGTATTTTTTTATAGAGAACTTTAGTTAAGGACTAGAATGATATTTTATGTAAATGGGCTACACAAATGGTTAGCCCTCCCTTATCAATTGTCCCTTATGGGGTTTTAAGTTGCTCCCAGTGTGTTCAAGCACTACCCACTTCCGTGTTAAAGTTAGTTTTGAATTGGAACCTGGAGCTGTTGGACAAGTGACGGATTTTAAGGAGTCAAATAAGAAACTTGAATGGGGTCTAAAGAAGGCAATTTCTCTTCCCACTGCTCTACTGTTGAATTATTCAATTGTTGGTGGATCTGAACACACATTGCGTGCCAAGCTAACGTTTTCGCAGGAATCACATGGCAATATCACGAAAGAAGCTGGACCCGTAAGCATGAATTTCACGATACCAATGTACAACTGTTCAAAACTTCAGGTGAAATATTTGCAGATAGAAAAGAAGTCGAAAACATACAATCCATATCGATGGGTCAGATACGTCACTCAAGCTAACTCTTACGTAGCTCGTATATGACCAAAAACAAGTAATGATGAACCTTACTTTCGTTTCCGTTGCAAATTTTCTTTTCTGACTTGCTTTCTCTTGTGTCGGCGGTGTGGTTGTTATTGAGCTAGATCTTGTTTCGTTGATAAACCGTGTAATATTTGTATCTTCACTAAACTGCAC

Network for GWHGAAZE001330

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00928.22	Adap_comp_sub	161	490	1.40E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12402	AP4M1	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030131	cellular_component	clathrin adaptor complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.648
	SRR3591706	second leaf	25.919
	SRR3591707	mature leaf	16.846
	SRR3591708	Shoot apex	39.404
	SRR3591709	Stem	41.772
	SRR3591710	White floral bud	29.939
	SRR3591711	White flower	29.913
	SRR3591712	Green floral bud	37.689
	SRR3591713	Yellow flower	27.847
SRP173429	SRR8316895	Juvenile bud stage	25.621
	SRR8316896	Juvenile bud stage	34.019
	SRR8316897	Juvenile bud stage	19.246
	SRR8316894	Third green stage	13.508
	SRR8316900	Third green stage	40.737
	SRR8316901	Third green stage	35.434
	SRR8316898	Complete white stage	19.656
	SRR8316899	Complete white stage	44.324
	SRR8316903	Complete white stage	27.838
	SRR8316902	Silver flowering stage	15.013
	SRR8316904	Silver flowering stage	22.066
	SRR8316905	Silver flowering stage	11.366
	SRR8316906	Gold flowering stage	30.031
	SRR8316907	Gold flowering stage	29.952
	SRR8316908	Gold flowering stage	34.657
SRP132670	SRR6706286	Control	29.567
	SRR6706287	Light intensity 50%	28.836
	SRR6706288	Light intensity 20%	33.111
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.820
	CNS0095593	Slightly white alabastrum(diploid) 2	32.595
	CNS0095594	Slightly white alabastrum(diploid) 3	28.859
	CNS0095595	Whole white alabastrum(diploid) 2	25.920
	CNS0095596	Whole white alabastrum(diploid) 3	28.804
	CNS0095597	Whole white alabastrum(diploid) 4	23.907
	CNS0095598	Silvery flower (diploied) 1	24.943
	CNS0095599	Silvery flower (diploied) 2	25.229
	CNS0095600	Silvery flower (diploied) 3	35.944
	CNS0095601	Golden flower (diploid) 1	23.487
	CNS0095602	Golden flower (diploid) 2	31.198
	CNS0095603	Golden flower (diploid) 3	30.757
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.752
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.655
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.637
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.502
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.937
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.363
	CNS0095610	Silvery flower (tetraploid) 1	32.614
	CNS0095611	Silvery flower (tetraploid) 2	31.234
	CNS0095612	Silvery flower (tetraploid) 3	28.185
	CNS0095613	Golden flower (tetraploid) 1	22.311
	CNS0095614	Golden flower (tetraploid) 2	26.794
	CNS0095615	Golden flower (tetraploid) 3	24.487
CRA001975	CRR073297	Stem 1	29.554
	CRR073298	Stem 2	29.404
	CRR073299	Stem 3	28.094
	CRR073300	Leaf 1	28.671
	CRR073301	Leaf 2	24.450
	CRR073302	Leaf 3	30.434
	CRR073303	Juvenile bud 1	29.009
	CRR073304	Juvenile bud 2	25.759
	CRR073305	Juvenile bud 3	25.742
	CRR073306	Third green 1	15.250
	CRR073307	Third green 2	18.279
	CRR073308	Third green 3	18.922
	CRR073309	Second white 1	19.681
	CRR073310	Second white 2	17.446
	CRR073311	Second white 3	15.478
	CRR073312	Silver flowering 1	13.819
	CRR073313	Silver flowering 2	9.630
	CRR073314	Silver flowering 3	11.475
	CRR073315	Gold flowering 1	16.301
	CRR073316	Gold flowering 2	23.114
	CRR073317	Gold flowering 3	13.309
	CRR073318	Tawny withering 1	34.072
	CRR073319	Tawny withering 2	31.418
	CRR073320	Tawny withering 3	39.732