Detail information of GWHGAAZE001356


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011004931.15.13083E-15PREDICTED: F-box/FBD/LRR-repeat protein At5g56420-like [Populus euphratica]
Swissprottr|Q9LTV2|FBD8_ARATH0.00000004Putative FBD-associated F-box protein At3g12840
trEMBLtr|B9IG21|B9IG21_POPTR1E-14Uncharacterized protein {ECO:0000313|EMBL:EEF05302.2}
TAIR10AT3G03360.10.0000004F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene3348242233487156-
GWHAAZE00000001mRNA3348242233487156-
GWHAAZE00000001exon3348703033487156-
GWHAAZE00000001exon3348644033486554-
GWHAAZE00000001exon3348601033486094-
GWHAAZE00000001exon3348242233482715-
GWHAAZE00000001five_prime_UTR3348703033487156-
GWHAAZE00000001five_prime_UTR3348644033486554-
GWHAAZE00000001five_prime_UTR3348606133486094-
GWHAAZE00000001CDS3348601033486060-
GWHAAZE00000001CDS3348242233482715-
Transcript Sequence

Network for GWHGAAZE001356

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box26601.90E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.401
SRR3591708Shoot apex0.472
SRR3591709Stem0.271
SRR3591710White floral bud0.307
SRR3591711White flower1.144
SRR3591712Green floral bud0.711
SRR3591713Yellow flower0.128
SRP173429 SRR8316895Juvenile bud stage 2.855
SRR8316896Juvenile bud stage 3.897
SRR8316897Juvenile bud stage 0.729
SRR8316894Third green stage 1.863
SRR8316900Third green stage 2.948
SRR8316901Third green stage 2.366
SRR8316898Complete white stage 1.344
SRR8316899Complete white stage 2.097
SRR8316903Complete white stage 2.370
SRR8316902Silver flowering stage0.421
SRR8316904Silver flowering stage1.494
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 1.377
SRR8316907Gold flowering stage 1.861
SRR8316908Gold flowering stage 2.017
SRP132670SRR6706286Control1.056
SRR6706287Light intensity 50%0.910
SRR6706288Light intensity 20%2.195
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.786
CNS0095593Slightly white alabastrum(diploid) 21.247
CNS0095594Slightly white alabastrum(diploid) 30.981
CNS0095595Whole white alabastrum(diploid) 21.190
CNS0095596Whole white alabastrum(diploid) 31.522
CNS0095597Whole white alabastrum(diploid) 41.122
CNS0095598Silvery flower (diploied) 12.604
CNS0095599Silvery flower (diploied) 20.321
CNS0095600Silvery flower (diploied) 31.979
CNS0095601Golden flower (diploid) 10.513
CNS0095602Golden flower (diploid) 21.882
CNS0095603Golden flower (diploid) 33.023
CNS0095604Slightly white alabastrum(tetraploid) 14.583
CNS0095605Slightly white alabastrum(tetraploid) 23.776
CNS0095606Slightly white alabastrum(tetraploid) 33.653
CNS0095607Whole white alabastrum(tetraploid) 12.504
CNS0095608Whole white alabastrum(tetraploid) 21.521
CNS0095609Whole white alabastrum(tetraploid) 33.697
CNS0095610Silvery flower (tetraploid) 14.183
CNS0095611Silvery flower (tetraploid) 25.122
CNS0095612Silvery flower (tetraploid) 35.657
CNS0095613Golden flower (tetraploid) 11.738
CNS0095614Golden flower (tetraploid) 23.526
CNS0095615Golden flower (tetraploid) 31.454
CRA001975CRR073297Stem 11.003
CRR073298Stem 21.753
CRR073299Stem 30.995
CRR073300Leaf 10.991
CRR073301Leaf 21.998
CRR073302Leaf 30.704
CRR073303Juvenile bud 10.499
CRR073304Juvenile bud 20.912
CRR073305Juvenile bud 30.471
CRR073306Third green 10.476
CRR073307Third green 20.060
CRR073308Third green 30.253
CRR073309Second white 10.000
CRR073310Second white 20.557
CRR073311Second white 30.503
CRR073312Silver flowering 10.326
CRR073313Silver flowering 20.516
CRR073314Silver flowering 30.353
CRR073315Gold flowering 10.791
CRR073316Gold flowering 20.023
CRR073317Gold flowering 30.449
CRR073318Tawny withering 10.295
CRR073319Tawny withering 20.083
CRR073320Tawny withering 30.075