Gene detail

Detail information of GWHGAAZE001359

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008353908.1	2.8644E-170	PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase, partial [Malus domestica]
Swissprot	tr\|O22899\|DHX15_ARATH	1E-153	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|M1AI35\|M1AI35_SOLTU	2E-172	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400023283}
TAIR10	AT3G62310.1	4E-120	RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	33549082	33550460	+
GWHAAZE00000001	mRNA	33549082	33550460	+
GWHAAZE00000001	exon	33549082	33549378	+
GWHAAZE00000001	exon	33549764	33549966	+
GWHAAZE00000001	exon	33550079	33550460	+
GWHAAZE00000001	CDS	33549082	33549378	+
GWHAAZE00000001	CDS	33549764	33549966	+
GWHAAZE00000001	CDS	33550079	33550460	+

Transcript Sequence
>GWHTAAZE001363 ATGGGTTCAGAGAGGAAAAGGAAGATAAGTTTGTTCGATGTGGTGGACGATAGTTCCTCAGTGGCGGCGAAGGCACTCAAAGCAGCTGCTAACGGAGGAATGGCCAACAGCACGACGACGATTTCGTCTATGTTGAACAGGTGGAATGGTAGGCCTTACTCGCAGAGGTATTACGAGATACTGGAGGTAAGGAAGAATCTGCCGGTATGGCACCAGAAAGAGGAGTTCTTGAAGGTCTTAAAACAAAATCAAACCCTTATCCTTGTCGGCGAAACCGGTAGTGGTAAAACCACCCAGATTCCTCAGTTTGTTTTGGAAGCTATAGAGGTGGAGAGCGCAGATAAGCGCAAGAAGTTTATGGTTGGATGCACCCAGCCTCGGAGAGTGGCTGCAATGTCCGTTTCTCGTCGAGTTGCTGAAGAGATGGATGTAACTATTGGAGAGGAAGTAGGTTATAGCATCCGTTTTGAAGACTGCAGTAGTTCAAGAACTGTTTTGAAGTATTTAACTGATGGTATGCTTTTAAGAGAAGCCATGACCGATCCACTTTTGGAAAGGTATAAAGTAATAATTCTTGATGAGGCTCATGAAAGAACTTTGGCAACAGATGTCTTGTTTGGGCTATTGAAGGAAGTGCTGAAAAACAGACCTGATCTGAAACTAGTTGTGATGAGTGCTACTCTTGAGGCTGAAAAGTTTCAGGGTTATTTTTATGGTGCTCCTCTCATGAAAGTTCCTGGACGGCTTCATCCTGTCGAGATTTTTTACACGCAAGATCCGGAGAGGGATTATCTTGAAGCAGCCATTCGAACGGTTGTGCAGATACACTTGTATGAACCCCTGGTGACGTACTTGTTTTTCTCACTGGAGAGGAGGAGATAG

Network for GWHGAAZE001359

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13401.7	AAA_22	82	224	3.50E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12820	DHX15, PRP43	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.972
	SRR3591706	second leaf	17.534
	SRR3591707	mature leaf	18.233
	SRR3591708	Shoot apex	19.105
	SRR3591709	Stem	19.881
	SRR3591710	White floral bud	25.352
	SRR3591711	White flower	26.068
	SRR3591712	Green floral bud	19.297
	SRR3591713	Yellow flower	18.067
SRP173429	SRR8316895	Juvenile bud stage	21.487
	SRR8316896	Juvenile bud stage	27.166
	SRR8316897	Juvenile bud stage	12.024
	SRR8316894	Third green stage	11.963
	SRR8316900	Third green stage	30.167
	SRR8316901	Third green stage	24.031
	SRR8316898	Complete white stage	9.093
	SRR8316899	Complete white stage	34.710
	SRR8316903	Complete white stage	20.522
	SRR8316902	Silver flowering stage	10.552
	SRR8316904	Silver flowering stage	15.560
	SRR8316905	Silver flowering stage	8.481
	SRR8316906	Gold flowering stage	27.060
	SRR8316907	Gold flowering stage	20.526
	SRR8316908	Gold flowering stage	21.559
SRP132670	SRR6706286	Control	27.768
	SRR6706287	Light intensity 50%	29.238
	SRR6706288	Light intensity 20%	34.514
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.063
	CNS0095593	Slightly white alabastrum(diploid) 2	7.048
	CNS0095594	Slightly white alabastrum(diploid) 3	9.112
	CNS0095595	Whole white alabastrum(diploid) 2	8.225
	CNS0095596	Whole white alabastrum(diploid) 3	7.384
	CNS0095597	Whole white alabastrum(diploid) 4	7.765
	CNS0095598	Silvery flower (diploied) 1	20.618
	CNS0095599	Silvery flower (diploied) 2	16.503
	CNS0095600	Silvery flower (diploied) 3	30.480
	CNS0095601	Golden flower (diploid) 1	13.623
	CNS0095602	Golden flower (diploid) 2	31.162
	CNS0095603	Golden flower (diploid) 3	31.182
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.863
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.516
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.681
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.712
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.057
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.363
	CNS0095610	Silvery flower (tetraploid) 1	34.839
	CNS0095611	Silvery flower (tetraploid) 2	35.085
	CNS0095612	Silvery flower (tetraploid) 3	29.582
	CNS0095613	Golden flower (tetraploid) 1	11.227
	CNS0095614	Golden flower (tetraploid) 2	26.902
	CNS0095615	Golden flower (tetraploid) 3	26.530
CRA001975	CRR073297	Stem 1	33.871
	CRR073298	Stem 2	31.244
	CRR073299	Stem 3	30.029
	CRR073300	Leaf 1	33.764
	CRR073301	Leaf 2	27.177
	CRR073302	Leaf 3	22.858
	CRR073303	Juvenile bud 1	19.471
	CRR073304	Juvenile bud 2	15.141
	CRR073305	Juvenile bud 3	31.598
	CRR073306	Third green 1	10.830
	CRR073307	Third green 2	11.319
	CRR073308	Third green 3	10.860
	CRR073309	Second white 1	7.446
	CRR073310	Second white 2	8.762
	CRR073311	Second white 3	15.174
	CRR073312	Silver flowering 1	13.304
	CRR073313	Silver flowering 2	14.635
	CRR073314	Silver flowering 3	15.527
	CRR073315	Gold flowering 1	8.017
	CRR073316	Gold flowering 2	23.010
	CRR073317	Gold flowering 3	13.020
	CRR073318	Tawny withering 1	14.397
	CRR073319	Tawny withering 2	13.038
	CRR073320	Tawny withering 3	21.715