Detail information of GWHGAAZE001395


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP19556.10unnamed protein product [Coffea canephora]
Swissprottr|F4IHS2|SYD_ARATH0Chromatin structure-remodeling complex protein SYD
trEMBLtr|A0A068VFR1|A0A068VFR1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_550 {ECO:0000313|EMBL:CDP19556.1}
TAIR10AT2G28290.20P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene3567360135681147-
GWHAAZE00000001mRNA3567360135681147-
GWHAAZE00000001exon3567360135673951-
GWHAAZE00000001exon3567405435674179-
GWHAAZE00000001exon3567525835675471-
GWHAAZE00000001exon3567576935675932-
GWHAAZE00000001exon3567604435676140-
GWHAAZE00000001exon3567814535678201-
GWHAAZE00000001exon3567839035678433-
GWHAAZE00000001exon3567873835678926-
GWHAAZE00000001exon3567906535679245-
GWHAAZE00000001exon3567955035679735-
GWHAAZE00000001exon3568104435681147-
GWHAAZE00000001CDS3568104435681147-
GWHAAZE00000001CDS3567955035679735-
GWHAAZE00000001CDS3567906535679245-
GWHAAZE00000001CDS3567873835678926-
GWHAAZE00000001CDS3567839035678433-
GWHAAZE00000001CDS3567814535678201-
GWHAAZE00000001CDS3567604435676140-
GWHAAZE00000001CDS3567576935675932-
GWHAAZE00000001CDS3567525835675471-
GWHAAZE00000001CDS3567405435674179-
GWHAAZE00000001CDS3567370935673951-
GWHAAZE00000001three_prime_UTR3567360135673708-
Transcript Sequence

Network for GWHGAAZE001395

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00176.24SNF2_N2644961.80E-62
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.105
SRR3591706second leaf6.753
SRR3591707mature leaf7.418
SRR3591708Shoot apex4.408
SRR3591709Stem9.777
SRR3591710White floral bud6.846
SRR3591711White flower9.436
SRR3591712Green floral bud5.694
SRR3591713Yellow flower5.237
SRP173429 SRR8316895Juvenile bud stage 7.993
SRR8316896Juvenile bud stage 7.719
SRR8316897Juvenile bud stage 4.117
SRR8316894Third green stage 5.796
SRR8316900Third green stage 8.308
SRR8316901Third green stage 8.336
SRR8316898Complete white stage 0.890
SRR8316899Complete white stage 4.496
SRR8316903Complete white stage 6.679
SRR8316902Silver flowering stage1.874
SRR8316904Silver flowering stage5.956
SRR8316905Silver flowering stage2.198
SRR8316906Gold flowering stage 9.285
SRR8316907Gold flowering stage 6.947
SRR8316908Gold flowering stage 7.246
SRP132670SRR6706286Control6.936
SRR6706287Light intensity 50%7.968
SRR6706288Light intensity 20%8.981
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.566
CNS0095593Slightly white alabastrum(diploid) 21.627
CNS0095594Slightly white alabastrum(diploid) 32.032
CNS0095595Whole white alabastrum(diploid) 22.253
CNS0095596Whole white alabastrum(diploid) 31.114
CNS0095597Whole white alabastrum(diploid) 41.924
CNS0095598Silvery flower (diploied) 15.936
CNS0095599Silvery flower (diploied) 25.205
CNS0095600Silvery flower (diploied) 315.165
CNS0095601Golden flower (diploid) 14.597
CNS0095602Golden flower (diploid) 218.847
CNS0095603Golden flower (diploid) 318.453
CNS0095604Slightly white alabastrum(tetraploid) 11.969
CNS0095605Slightly white alabastrum(tetraploid) 21.340
CNS0095606Slightly white alabastrum(tetraploid) 38.438
CNS0095607Whole white alabastrum(tetraploid) 11.858
CNS0095608Whole white alabastrum(tetraploid) 21.680
CNS0095609Whole white alabastrum(tetraploid) 34.680
CNS0095610Silvery flower (tetraploid) 19.834
CNS0095611Silvery flower (tetraploid) 216.085
CNS0095612Silvery flower (tetraploid) 37.426
CNS0095613Golden flower (tetraploid) 11.701
CNS0095614Golden flower (tetraploid) 24.216
CNS0095615Golden flower (tetraploid) 39.143
CRA001975CRR073297Stem 15.548
CRR073298Stem 25.594
CRR073299Stem 32.172
CRR073300Leaf 14.705
CRR073301Leaf 23.610
CRR073302Leaf 31.911
CRR073303Juvenile bud 10.674
CRR073304Juvenile bud 20.963
CRR073305Juvenile bud 33.548
CRR073306Third green 10.965
CRR073307Third green 20.168
CRR073308Third green 31.109
CRR073309Second white 10.538
CRR073310Second white 21.025
CRR073311Second white 33.549
CRR073312Silver flowering 13.010
CRR073313Silver flowering 20.858
CRR073314Silver flowering 30.963
CRR073315Gold flowering 10.834
CRR073316Gold flowering 23.098
CRR073317Gold flowering 30.830
CRR073318Tawny withering 11.585
CRR073319Tawny withering 20.323
CRR073320Tawny withering 31.158