Gene detail

Detail information of GWHGAAZE001410

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002300327.2	1.2906E-141	Molybdenum cofactor synthesis protein 3 [Populus trichocarpa]
Swissprot	tr\|Q9ZNW0\|MOCS3_ARATH	4E-129	Molybdopterin-synthase sulfurtransferase {ECO:0000255\|HAMAP-Rule:MF_03049}
trEMBL	tr\|B9GJ37\|B9GJ37_POPTR	5E-142	Adenylyltransferase and sulfurtransferase MOCS3 {ECO:0000256\|HAMAP-Rule:MF_03049}
TAIR10	AT5G55130.1	3E-90	co-factor for nitrate, reductase and xanthine dehydrogenase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	36546517	36553438	+
GWHAAZE00000001	mRNA	36546517	36553438	+
GWHAAZE00000001	exon	36546517	36546772	+
GWHAAZE00000001	exon	36548315	36548407	+
GWHAAZE00000001	exon	36548616	36548671	+
GWHAAZE00000001	exon	36549686	36549750	+
GWHAAZE00000001	exon	36549923	36549997	+
GWHAAZE00000001	exon	36550125	36550203	+
GWHAAZE00000001	exon	36550843	36550881	+
GWHAAZE00000001	exon	36551573	36551681	+
GWHAAZE00000001	exon	36553320	36553438	+
GWHAAZE00000001	CDS	36546517	36546772	+
GWHAAZE00000001	CDS	36548315	36548407	+
GWHAAZE00000001	CDS	36548616	36548671	+
GWHAAZE00000001	CDS	36549686	36549750	+
GWHAAZE00000001	CDS	36549923	36549997	+
GWHAAZE00000001	CDS	36550125	36550203	+
GWHAAZE00000001	CDS	36550843	36550881	+
GWHAAZE00000001	CDS	36551573	36551681	+
GWHAAZE00000001	CDS	36553320	36553438	+

Transcript Sequence
>GWHTAAZE001414 ATGGAGTCCAACGTTGGAGGCGAGGCCTCTAGAATACTGCGCGAGATTGATTCATTGGAGTCTTCGAAGAAGGATATCGATCGCAAAATTTCACTTCTTGAATCACAGCTTCGCCAAATCCAATTGCAAGAGGAGAAGCCCAATTCAAATCCTTCAACAATAATAAACGAAGGATTCCAACATGGACATGGACTGTCCCCTGATATGATCTATAGATACAGTCGTCATCTCTTGCTTCCTTCTTTTGGTGTTCAAGGGCAATCAAATCTCGTCAAGTCTTCAGTTTTAGTTGTTGGAGCTGGAGGGTTGGGATCACCTGCTCTGTTATATCTTGCAGCTTGTGGTGTTGGTCAAATAGGTATTGTTGATCATGATGTAGTTGAACTTAACAATTTGCACAGGCAGGTTATCCACACTGAAGCATACATTGGCCGTTCTAAAGTGGAATCTGCTGCTGCTGCTTGTCGATTGATTAACTCCACTATTCAGATCGTGGAATACAAAGAAGCTCTACGCACTTCCAATGCTTTGGAGATTATGAATAAATATGACTTAGTAATAGATGCAACTGACAATGTTCCTAGCCGTTACATGATCAATGATTGCTGTGTTGTGCTGGGAAAGCCTCTTGTATCAGGTGCTGCACTGGGACTGGAAGGGCAGCTCACAGTCTACAATTACAATGGAGGCCCATGCTACCGTTGCCTGTTTCCAACTCCACCACCGACAACAGCATGTCAAAGATGTTCTGACAGTGGTGTTCTAGGCGTTGAGAAAGGCCTTTCTGAAGATCTGACAGTTTACATAAACCCTTCTGAGACTGGAAAACACAGTTCTGAATTGGGAACGGATGGAACAATTGGTTGGGGTTATGATTGGGAATGCACATAA

Network for GWHGAAZE001410

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.22	ThiF	73	249	1.10E-55

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ThiF

KEGG pathway

KO	Enzyme	pathway	mapID
K11996	MOCS3, UBA4	Sulfur relay system	map04122

Gene Ontology

GO term	Ontology	Name
GO:0008641	molecular_function	ubiquitin-like modifier activating enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.431
	SRR3591706	second leaf	1.622
	SRR3591707	mature leaf	2.675
	SRR3591708	Shoot apex	4.990
	SRR3591709	Stem	8.452
	SRR3591710	White floral bud	5.022
	SRR3591711	White flower	7.131
	SRR3591712	Green floral bud	5.274
	SRR3591713	Yellow flower	8.157
SRP173429	SRR8316895	Juvenile bud stage	4.374
	SRR8316896	Juvenile bud stage	4.935
	SRR8316897	Juvenile bud stage	0.207
	SRR8316894	Third green stage	1.825
	SRR8316900	Third green stage	8.622
	SRR8316901	Third green stage	6.157
	SRR8316898	Complete white stage	4.767
	SRR8316899	Complete white stage	14.183
	SRR8316903	Complete white stage	7.049
	SRR8316902	Silver flowering stage	3.529
	SRR8316904	Silver flowering stage	5.269
	SRR8316905	Silver flowering stage	2.924
	SRR8316906	Gold flowering stage	7.977
	SRR8316907	Gold flowering stage	7.789
	SRR8316908	Gold flowering stage	3.343
SRP132670	SRR6706286	Control	7.532
	SRR6706287	Light intensity 50%	7.545
	SRR6706288	Light intensity 20%	9.643
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.089
	CNS0095593	Slightly white alabastrum(diploid) 2	3.498
	CNS0095594	Slightly white alabastrum(diploid) 3	1.580
	CNS0095595	Whole white alabastrum(diploid) 2	3.402
	CNS0095596	Whole white alabastrum(diploid) 3	2.753
	CNS0095597	Whole white alabastrum(diploid) 4	1.141
	CNS0095598	Silvery flower (diploied) 1	5.203
	CNS0095599	Silvery flower (diploied) 2	5.371
	CNS0095600	Silvery flower (diploied) 3	7.886
	CNS0095601	Golden flower (diploid) 1	5.209
	CNS0095602	Golden flower (diploid) 2	9.396
	CNS0095603	Golden flower (diploid) 3	7.369
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.091
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.150
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.938
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.465
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.166
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.612
	CNS0095610	Silvery flower (tetraploid) 1	10.854
	CNS0095611	Silvery flower (tetraploid) 2	10.662
	CNS0095612	Silvery flower (tetraploid) 3	8.573
	CNS0095613	Golden flower (tetraploid) 1	5.577
	CNS0095614	Golden flower (tetraploid) 2	10.389
	CNS0095615	Golden flower (tetraploid) 3	8.153
CRA001975	CRR073297	Stem 1	10.016
	CRR073298	Stem 2	6.770
	CRR073299	Stem 3	7.826
	CRR073300	Leaf 1	8.287
	CRR073301	Leaf 2	5.699
	CRR073302	Leaf 3	11.503
	CRR073303	Juvenile bud 1	8.385
	CRR073304	Juvenile bud 2	7.443
	CRR073305	Juvenile bud 3	10.437
	CRR073306	Third green 1	1.718
	CRR073307	Third green 2	3.825
	CRR073308	Third green 3	4.533
	CRR073309	Second white 1	3.507
	CRR073310	Second white 2	3.453
	CRR073311	Second white 3	3.264
	CRR073312	Silver flowering 1	3.086
	CRR073313	Silver flowering 2	5.094
	CRR073314	Silver flowering 3	5.187
	CRR073315	Gold flowering 1	3.154
	CRR073316	Gold flowering 2	3.321
	CRR073317	Gold flowering 3	3.055
	CRR073318	Tawny withering 1	5.578
	CRR073319	Tawny withering 2	4.369
	CRR073320	Tawny withering 3	4.359