Gene detail

Detail information of GWHGAAZE001440

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283248.2	1.3139E-130	PREDICTED: octanoyltransferase isoform X3 [Vitis vinifera]
Swissprot	tr\|Q9SXP7\|LIPB_ARATH	1E-124	Octanoyltransferase
trEMBL	tr\|F6GUD8\|F6GUD8_VITVI	1E-129	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43759.1}
TAIR10	AT1G04640.2	6E-99	lipoyltransferase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	43228968	43229618	-
GWHAAZE00000001	mRNA	43228968	43229618	-
GWHAAZE00000001	exon	43228968	43229618	-
GWHAAZE00000001	CDS	43228968	43229618	-

Transcript Sequence
>GWHTAAZE001444 ATGGGCACTGTCAACTACCTGGACGCACTTAAGCTGCAAGTGAAGCTCGCTTCTGATAGAAAAACCGGTACGATTCCCGATACTCTTCTCTCTCTGCAGCACCCACCTACGTATACCCTTGGAAAGCGCCGGACCGATCACAATTTACTAGTTCCCGAGTCTGAACTCAAAACTATGGGGGCGGAGCTTCACTACACACAAAGGGGAGGGGATATTACATTTCATGGACCCCACCAAGCAGTCTTATATCCCATTATATCTTTGAGGGATGTAGGCATTGGTGCTAGAAATTATGTTGAAAAACTTGAGTTAACTATGATTGAATTAGCGTCTATTTATGGTGTGAATGCTCGTCCAGGAGGAAAATGTGAGACTGGGGTTTGGGTTGGAGAGCGAAAAATTGGGGCAATTGGGGTTCAAATTTCATCTGGGATTACTTCTCATGGGTTGGCTTTTAATATTAATCCCGATTTAAGCTACTTCAAGCATATTGTGCCTTGTGGGATTGCGGATAAAGAAGTTACATCTTTGAGTAGAGAGACGGACAAAGTTCTTCCTGATGAAGAAGTGATTCATGACCAATTAATTTCTTGTTTTGGGAGGTTGTTTGGTTTTACTAGTATTATTTGGAAAGATCAATCATATCCATAG

Network for GWHGAAZE001440

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03099.20	BPL_LplA_LipB	50	157	5.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K23735	LIPT2, LIP2	Metabolic pathways	map01100
K23735	LIPT2, LIP2	Lipoic acid metabolism	map00785

Gene Ontology

GO term	Ontology	Name
GO:0009249	biological_process	protein lipoylation
GO:0006464	biological_process	cellular protein modification process
GO:0033819	molecular_function	lipoyl(octanoyl) transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.605
	SRR3591706	second leaf	9.805
	SRR3591707	mature leaf	9.491
	SRR3591708	Shoot apex	20.085
	SRR3591709	Stem	17.518
	SRR3591710	White floral bud	14.254
	SRR3591711	White flower	17.273
	SRR3591712	Green floral bud	16.184
	SRR3591713	Yellow flower	19.329
SRP173429	SRR8316895	Juvenile bud stage	6.853
	SRR8316896	Juvenile bud stage	10.713
	SRR8316897	Juvenile bud stage	1.754
	SRR8316894	Third green stage	4.068
	SRR8316900	Third green stage	12.040
	SRR8316901	Third green stage	12.343
	SRR8316898	Complete white stage	6.923
	SRR8316899	Complete white stage	19.801
	SRR8316903	Complete white stage	7.733
	SRR8316902	Silver flowering stage	6.819
	SRR8316904	Silver flowering stage	9.373
	SRR8316905	Silver flowering stage	4.865
	SRR8316906	Gold flowering stage	20.556
	SRR8316907	Gold flowering stage	19.186
	SRR8316908	Gold flowering stage	12.370
SRP132670	SRR6706286	Control	13.363
	SRR6706287	Light intensity 50%	14.834
	SRR6706288	Light intensity 20%	13.072
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.568
	CNS0095593	Slightly white alabastrum(diploid) 2	8.503
	CNS0095594	Slightly white alabastrum(diploid) 3	6.769
	CNS0095595	Whole white alabastrum(diploid) 2	10.378
	CNS0095596	Whole white alabastrum(diploid) 3	11.783
	CNS0095597	Whole white alabastrum(diploid) 4	11.439
	CNS0095598	Silvery flower (diploied) 1	9.022
	CNS0095599	Silvery flower (diploied) 2	5.764
	CNS0095600	Silvery flower (diploied) 3	13.426
	CNS0095601	Golden flower (diploid) 1	7.068
	CNS0095602	Golden flower (diploid) 2	11.956
	CNS0095603	Golden flower (diploid) 3	11.748
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.568
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.919
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.846
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.987
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.272
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.845
	CNS0095610	Silvery flower (tetraploid) 1	11.368
	CNS0095611	Silvery flower (tetraploid) 2	9.174
	CNS0095612	Silvery flower (tetraploid) 3	8.467
	CNS0095613	Golden flower (tetraploid) 1	11.503
	CNS0095614	Golden flower (tetraploid) 2	10.409
	CNS0095615	Golden flower (tetraploid) 3	10.023
CRA001975	CRR073297	Stem 1	8.683
	CRR073298	Stem 2	9.354
	CRR073299	Stem 3	9.245
	CRR073300	Leaf 1	9.054
	CRR073301	Leaf 2	10.528
	CRR073302	Leaf 3	9.964
	CRR073303	Juvenile bud 1	9.117
	CRR073304	Juvenile bud 2	6.870
	CRR073305	Juvenile bud 3	6.658
	CRR073306	Third green 1	5.222
	CRR073307	Third green 2	4.551
	CRR073308	Third green 3	4.175
	CRR073309	Second white 1	8.541
	CRR073310	Second white 2	5.700
	CRR073311	Second white 3	5.525
	CRR073312	Silver flowering 1	6.385
	CRR073313	Silver flowering 2	6.487
	CRR073314	Silver flowering 3	5.983
	CRR073315	Gold flowering 1	8.267
	CRR073316	Gold flowering 2	11.532
	CRR073317	Gold flowering 3	7.436
	CRR073318	Tawny withering 1	7.694
	CRR073319	Tawny withering 2	9.256
	CRR073320	Tawny withering 3	7.324