Gene detail

Detail information of GWHGAAZE001445

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283248.2	1.0383E-132	PREDICTED: octanoyltransferase isoform X3 [Vitis vinifera]
Swissprot	tr\|Q9SXP7\|LIPB_ARATH	2E-127	Octanoyltransferase
trEMBL	tr\|F6GUD8\|F6GUD8_VITVI	6E-132	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43759.1}
TAIR10	AT1G04640.2	4E-101	lipoyltransferase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	43315536	43316207	-
GWHAAZE00000001	mRNA	43315536	43316207	-
GWHAAZE00000001	exon	43315536	43316207	-
GWHAAZE00000001	CDS	43315536	43316207	-

Transcript Sequence
>GWHTAAZE001449 ATGGGCACTGTCAACTACCTGGACGCACTTAAGCTGCAGGTGAAGCTTGCTTCTGATAGAAAAACCGGTACGATTCCCGATACTCTTCTCTCTCTACAGCACCCACCTACGTATACCCTTGGAAAGCGCCGGACCGATCACAATTTACTAGTTCCCGAGTCTGAACTCAAAACTATGGGGGCGGAGCTTCACTATACACAAAGGGGAGGGGATATTACATTTCATGGACCCCACCAAGCAATCTTATATCCCATTATATCTTTGAGGGATGTAGGCATTGGTGCTAGAAATTATGTTGAAAAACTTGAGTTAACTATGATTGAATTAGCGTCTATTTATGGTGTGAATGCTCGTCCAGGAGGAAAATGTGAGACTGGGGTTTGGGTTGGAGAGCGAAAAATTGGGGCAATTGGGGTTCAAATTTCATCTGGGATTACTTCTCATGGGTTGGCTTTTAATATTAATCCCGATTTAAGCTACTTCAAGCATATTGTGCCTTGTGGGATTGCGGATAAAGAAGTTACATCTTTGAGTAGAGAGACAGACAAAGTTCTTCCTGATGAAGAAGTGATTCATGAGCAATTAATTTCTTGTTTTGGGAGGTTGTTTGGTTTTACTAGTATTATTTGGAAAGATAAATCATCCATAGAATTGGATAACGAGCAAGATTGA

Network for GWHGAAZE001445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03099.20	BPL_LplA_LipB	50	157	7.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K23735	LIPT2, LIP2	Metabolic pathways	map01100
K23735	LIPT2, LIP2	Lipoic acid metabolism	map00785

Gene Ontology

GO term	Ontology	Name
GO:0009249	biological_process	protein lipoylation
GO:0006464	biological_process	cellular protein modification process
GO:0033819	molecular_function	lipoyl(octanoyl) transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.444
	SRR3591706	second leaf	1.367
	SRR3591707	mature leaf	2.031
	SRR3591708	Shoot apex	3.800
	SRR3591709	Stem	4.763
	SRR3591710	White floral bud	1.869
	SRR3591711	White flower	2.347
	SRR3591712	Green floral bud	2.074
	SRR3591713	Yellow flower	1.654
SRP173429	SRR8316895	Juvenile bud stage	4.040
	SRR8316896	Juvenile bud stage	4.253
	SRR8316897	Juvenile bud stage	0.986
	SRR8316894	Third green stage	2.158
	SRR8316900	Third green stage	6.295
	SRR8316901	Third green stage	7.061
	SRR8316898	Complete white stage	2.752
	SRR8316899	Complete white stage	8.092
	SRR8316903	Complete white stage	4.204
	SRR8316902	Silver flowering stage	3.071
	SRR8316904	Silver flowering stage	3.031
	SRR8316905	Silver flowering stage	1.914
	SRR8316906	Gold flowering stage	7.584
	SRR8316907	Gold flowering stage	5.800
	SRR8316908	Gold flowering stage	4.365
SRP132670	SRR6706286	Control	4.644
	SRR6706287	Light intensity 50%	4.100
	SRR6706288	Light intensity 20%	4.258
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.458
	CNS0095593	Slightly white alabastrum(diploid) 2	9.425
	CNS0095594	Slightly white alabastrum(diploid) 3	7.365
	CNS0095595	Whole white alabastrum(diploid) 2	11.461
	CNS0095596	Whole white alabastrum(diploid) 3	9.723
	CNS0095597	Whole white alabastrum(diploid) 4	10.145
	CNS0095598	Silvery flower (diploied) 1	7.083
	CNS0095599	Silvery flower (diploied) 2	6.222
	CNS0095600	Silvery flower (diploied) 3	6.070
	CNS0095601	Golden flower (diploid) 1	6.392
	CNS0095602	Golden flower (diploid) 2	8.018
	CNS0095603	Golden flower (diploid) 3	6.229
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.643
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.008
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.885
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.879
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.012
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.060
	CNS0095610	Silvery flower (tetraploid) 1	9.909
	CNS0095611	Silvery flower (tetraploid) 2	5.942
	CNS0095612	Silvery flower (tetraploid) 3	6.457
	CNS0095613	Golden flower (tetraploid) 1	8.092
	CNS0095614	Golden flower (tetraploid) 2	5.367
	CNS0095615	Golden flower (tetraploid) 3	6.903
CRA001975	CRR073297	Stem 1	3.610
	CRR073298	Stem 2	5.739
	CRR073299	Stem 3	3.394
	CRR073300	Leaf 1	4.749
	CRR073301	Leaf 2	5.508
	CRR073302	Leaf 3	4.174
	CRR073303	Juvenile bud 1	4.009
	CRR073304	Juvenile bud 2	3.257
	CRR073305	Juvenile bud 3	3.443
	CRR073306	Third green 1	2.070
	CRR073307	Third green 2	1.299
	CRR073308	Third green 3	1.228
	CRR073309	Second white 1	3.256
	CRR073310	Second white 2	2.507
	CRR073311	Second white 3	3.206
	CRR073312	Silver flowering 1	1.910
	CRR073313	Silver flowering 2	2.028
	CRR073314	Silver flowering 3	1.958
	CRR073315	Gold flowering 1	2.008
	CRR073316	Gold flowering 2	2.686
	CRR073317	Gold flowering 3	1.212
	CRR073318	Tawny withering 1	3.919
	CRR073319	Tawny withering 2	3.260
	CRR073320	Tawny withering 3	4.651