Detail information of GWHGAAZE001447


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008359732.11.1722E-136PREDICTED: syntaxin-81-like isoform X1 [Malus domestica]
Swissprottr|P59277|SYP81_ARATH4E-109Syntaxin-81
trEMBLtr|A0A022QT72|A0A022QT72_ERYGU1E-136Uncharacterized protein {ECO:0000313|EMBL:EYU30483.1}
TAIR10AT1G51740.12E-88syntaxin of plants 81

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene4333778843340704-
GWHAAZE00000001mRNA4333778843340704-
GWHAAZE00000001exon4334063543340704-
GWHAAZE00000001exon4334045243340531-
GWHAAZE00000001exon4333984943339932-
GWHAAZE00000001exon4333964943339753-
GWHAAZE00000001exon4333931643339459-
GWHAAZE00000001exon4333867043338936-
GWHAAZE00000001exon4333841643338549-
GWHAAZE00000001exon4333778843338142-
GWHAAZE00000001five_prime_UTR4334063543340704-
GWHAAZE00000001five_prime_UTR4334053043340531-
GWHAAZE00000001CDS4334045243340529-
GWHAAZE00000001CDS4333984943339932-
GWHAAZE00000001CDS4333964943339753-
GWHAAZE00000001CDS4333931643339459-
GWHAAZE00000001CDS4333867043338936-
GWHAAZE00000001CDS4333843343338549-
GWHAAZE00000001three_prime_UTR4333841643338432-
GWHAAZE00000001three_prime_UTR4333778843338142-
Transcript Sequence

Network for GWHGAAZE001447

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10496.10Syntaxin-18_N5864.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08492STX18 SNARE interactions in vesicular transport map04130
Phagosomemap04145

Gene Ontology

GO term OntologyName
GO:0016192biological_processvesicle-mediated transport
GO:0016020cellular_componentmembrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.583
SRR3591706second leaf5.955
SRR3591707mature leaf6.389
SRR3591708Shoot apex8.938
SRR3591709Stem14.822
SRR3591710White floral bud7.708
SRR3591711White flower9.740
SRR3591712Green floral bud9.376
SRR3591713Yellow flower6.214
SRP173429 SRR8316895Juvenile bud stage 6.928
SRR8316896Juvenile bud stage 9.219
SRR8316897Juvenile bud stage 2.049
SRR8316894Third green stage 3.831
SRR8316900Third green stage 10.012
SRR8316901Third green stage 10.517
SRR8316898Complete white stage 4.757
SRR8316899Complete white stage 13.732
SRR8316903Complete white stage 5.012
SRR8316902Silver flowering stage4.680
SRR8316904Silver flowering stage5.312
SRR8316905Silver flowering stage2.228
SRR8316906Gold flowering stage 8.282
SRR8316907Gold flowering stage 8.715
SRR8316908Gold flowering stage 6.127
SRP132670SRR6706286Control9.794
SRR6706287Light intensity 50%11.728
SRR6706288Light intensity 20%10.447
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.693
CNS0095593Slightly white alabastrum(diploid) 29.179
CNS0095594Slightly white alabastrum(diploid) 38.592
CNS0095595Whole white alabastrum(diploid) 28.706
CNS0095596Whole white alabastrum(diploid) 37.502
CNS0095597Whole white alabastrum(diploid) 49.604
CNS0095598Silvery flower (diploied) 15.149
CNS0095599Silvery flower (diploied) 27.151
CNS0095600Silvery flower (diploied) 37.964
CNS0095601Golden flower (diploid) 17.005
CNS0095602Golden flower (diploid) 27.858
CNS0095603Golden flower (diploid) 37.510
CNS0095604Slightly white alabastrum(tetraploid) 14.262
CNS0095605Slightly white alabastrum(tetraploid) 24.031
CNS0095606Slightly white alabastrum(tetraploid) 35.778
CNS0095607Whole white alabastrum(tetraploid) 14.229
CNS0095608Whole white alabastrum(tetraploid) 25.013
CNS0095609Whole white alabastrum(tetraploid) 35.300
CNS0095610Silvery flower (tetraploid) 15.749
CNS0095611Silvery flower (tetraploid) 24.898
CNS0095612Silvery flower (tetraploid) 34.962
CNS0095613Golden flower (tetraploid) 14.166
CNS0095614Golden flower (tetraploid) 24.798
CNS0095615Golden flower (tetraploid) 34.797
CRA001975CRR073297Stem 18.346
CRR073298Stem 27.363
CRR073299Stem 36.275
CRR073300Leaf 17.499
CRR073301Leaf 28.905
CRR073302Leaf 34.809
CRR073303Juvenile bud 16.841
CRR073304Juvenile bud 23.708
CRR073305Juvenile bud 33.415
CRR073306Third green 12.799
CRR073307Third green 21.813
CRR073308Third green 33.003
CRR073309Second white 12.491
CRR073310Second white 23.314
CRR073311Second white 32.097
CRR073312Silver flowering 11.123
CRR073313Silver flowering 20.606
CRR073314Silver flowering 30.482
CRR073315Gold flowering 11.540
CRR073316Gold flowering 25.758
CRR073317Gold flowering 31.952
CRR073318Tawny withering 18.703
CRR073319Tawny withering 29.397
CRR073320Tawny withering 38.616