Gene detail

Detail information of GWHGAAZE001512

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007045055.1	9.4816E-174	Disease resistance family protein / LRR family protein isoform 2 [Theobroma cacao]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	5E-51	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A0A061E942\|A0A061E942_THECC	4E-174	Disease resistance family protein / LRR family protein isoform 2 {ECO:0000313\|EMBL:EOY00887.1}
TAIR10	AT2G34930.1	7E-93	disease resistance family protein / LRR family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	49046609	49048498	+
GWHAAZE00000001	mRNA	49046609	49048498	+
GWHAAZE00000001	exon	49046609	49048498	+
GWHAAZE00000001	CDS	49046609	49048498	+

Transcript Sequence
>GWHTAAZE001516 ATGGCAGCCATAACAGCCTTGCTCAAAATTACGACCCTTCTCGTCTTTTTCATTGCGAACTACTTTGTTTCCCTTCAAGCTTTCAAATTGTATGCAAATGAGAGCAATTTCCGTGGTGTGCAGTGCACTGAGAAGGAAAGGAGAGCCCTTCTCAAATTCAAGGAGGGTCTAGAAGATCCTTCTGGCTTTCTTTCTTCCTGGGTTGGCCACGATTGCTGTTCGTGGAAGGGCGTTGGCTGCAGCAACCTGACTGGTGAAGTCATAAAGCTTGATCTTAGCAACCCCAACTATTACTTGGGTGGTAAGCTAGGTCCTTTAAATGAATTACAACATTTGAATTACCTCAATCTCTCTTACAACACTTTCAGTGGAATGATTCCTCCAGATTTTGGAAATCTGTCAAACTTACACGTCCTTGACCTCCATTCATTTTATTATCCATTTCCTTGGGTCTCTGATTTGAATTGGCTCTCAGGTCTCTCTTCTTTAAAATTCCTTGACTTGACATTTGTGAATCTTAGTTTGGCAACAGCTCATTGGTTGCAAGCTGTCAACATGCTTCCTTCTCTGTCAGAGTTGCACTTGGCTCATACTAGACTTCAAACCATTCCTCTGTTTCTACCTCATTTGAATTTCACTTCTCTTTCGGTCCTCGATCTAAGTGGTAATTTTTATGGCTCTCAAGCACCTCAATGGTTGTTTAACATTAGTACAGTTGTGGAGCTTACACTTCAAGGCTGTTTTTCTAAAGGTTCCTTTCCCAGTATAATAGGTTGCAATTTACGCCATTTAGATCTGTCAGCCAATGGATTTAATGGTGAAATAAGTGAACTATTAGTAGGGAGTTTCTCTCGATGCCGTACTAGTAGCTTGGAGGAGTTGATTTTATCAGGTAACCAATTTAGTGGGCAGCTTCCAAATTCATGGGGACACCTTAACAACTCTTTAAGGACACTTGACCTTAGTTCAAACTCAATATCAGGCCCACTTCCAACATCCATTGGAGAGTTGTCAAAATTACATAATTTAAACCTCGGTTACAATAACCTGAATGGCTCCATCCCGAAAAGCCTCGGAAGACTTACGGAACTAAAAGAGTTGTTCCTCAACGGCAATGATTGGGAAGGGGTCCTATCACAAGATCACTTCCAAGGCCTTTCGAAATTGAAATTCTTGTCAATGTCATCCTTGAACAGAAATTTTGTCCTTAATTTGACCCCCGACTGGGTCCCTCCATTTAGCTTGAAAGCGATAAATATTTATGATTTCAAGTTAGGTCCCAAATTCCCAAAATGGCTCCAAACTCAAACACAACTTGATACCATATATCTTCGGAATGCTAGCATTTCAGAAGCAATACCTAGTTGGCTCTGGAAAATGTGTACTCATATTAGATACTTAGAACTTTCTCATAACCAAATCGGTGGAATTCTACCCAGTTCTTTATTATTTCCAAACAACACCAGAATCAATTTGAGTTTCAATTCCTTAGAGGGCCCACTCCCACTTTGGCCTAATGTAAGTTATCTCCACTTGGCAAACAACTCATTTTCTGGAACGATTCCTATAAATATTGGCCAAGTAATGTCTAAATTGCTAGATCTTGATCTATCTAGTAACAAACTCAATGGCAGCATTCCCTCTTCTCTAGGCAAGATAGACCGGTTGTATTATCTTTCACTATCGAAGAACCGATTATCCGGAAAAGTTCATGATCAATGGATGGGTGAAAATATCGAGTCATTAGATTTATCTGAGAACAACCTATCTGGTGTCTTCCCTGCTTCGTTGTGTTCTTTACCTTACCTTTTTGAGTTGAAATTGAGCAACAACAATTTTTTCGGGAAATTACCTTTTTCGTTAAAAATTGCAAAATTTGATCTTTCTTGA

Network for GWHGAAZE001512

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	45	81	8.70E-13
PF13855.7	LRR_8	315	373	2.20E-07
PF13516.7	LRR_6	461	476	0.039
PF13855.7	LRR_8	555	613	8.40E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.151
	SRR3591706	second leaf	0.040
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.074
	SRR3591709	Stem	0.078
	SRR3591710	White floral bud	0.262
	SRR3591711	White flower	0.540
	SRR3591712	Green floral bud	0.043
	SRR3591713	Yellow flower	0.048
SRP173429	SRR8316895	Juvenile bud stage	0.092
	SRR8316896	Juvenile bud stage	0.289
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.123
	SRR8316900	Third green stage	0.058
	SRR8316901	Third green stage	0.016
	SRR8316898	Complete white stage	0.114
	SRR8316899	Complete white stage	0.107
	SRR8316903	Complete white stage	0.277
	SRR8316902	Silver flowering stage	0.561
	SRR8316904	Silver flowering stage	0.960
	SRR8316905	Silver flowering stage	0.874
	SRR8316906	Gold flowering stage	0.701
	SRR8316907	Gold flowering stage	1.464
	SRR8316908	Gold flowering stage	0.016
SRP132670	SRR6706286	Control	0.025
	SRR6706287	Light intensity 50%	0.082
	SRR6706288	Light intensity 20%	0.014
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.099
	CNS0095594	Slightly white alabastrum(diploid) 3	0.046
	CNS0095595	Whole white alabastrum(diploid) 2	0.017
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.377
	CNS0095599	Silvery flower (diploied) 2	0.307
	CNS0095600	Silvery flower (diploied) 3	1.478
	CNS0095601	Golden flower (diploid) 1	0.065
	CNS0095602	Golden flower (diploid) 2	0.755
	CNS0095603	Golden flower (diploid) 3	0.568
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.018
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.010
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.002
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.002
	CRR073305	Juvenile bud 3	0.036
	CRR073306	Third green 1	0.023
	CRR073307	Third green 2	0.021
	CRR073308	Third green 3	0.074
	CRR073309	Second white 1	0.098
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.083
	CRR073316	Gold flowering 2	1.146
	CRR073317	Gold flowering 3	0.351
	CRR073318	Tawny withering 1	0.823
	CRR073319	Tawny withering 2	1.269
	CRR073320	Tawny withering 3	0.288