Gene detail

Detail information of GWHGAAZE001523

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007045055.1	0	Disease resistance family protein / LRR family protein isoform 2 [Theobroma cacao]
Swissprot	tr\|Q9SHI2\|Y1723_ARATH	6E-52	Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 (Precursor)
trEMBL	tr\|A0A061E942\|A0A061E942_THECC	0	Disease resistance family protein / LRR family protein isoform 2 {ECO:0000313\|EMBL:EOY00887.1}
TAIR10	AT2G34930.1	3E-113	disease resistance family protein / LRR family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	49662442	49665423	+
GWHAAZE00000001	mRNA	49662442	49665423	+
GWHAAZE00000001	exon	49662442	49664679	+
GWHAAZE00000001	exon	49665388	49665423	+
GWHAAZE00000001	CDS	49662442	49664679	+
GWHAAZE00000001	CDS	49665388	49665423	+

Transcript Sequence
>GWHTAAZE001527 ATGGCAGCCATAACAGCCTTATTCAAAGTTACAACCCTTCTGATCTTTTTCATTGCAAACTACTTTGTTTCCCTTCAAGCTTTTAAATTATACGCGAATGCTAGCAATTTCCATGGGGTGCGGTGCATTGAGAAGGAAAGGAAAGCCCTTCTCAAATTCAAGGAGGGTCTAGAAGATCCTTCTGGTTTTCTTTCTTCCTGGGTTGGCCACGATTGCTGTTCGTGGAATGGCGTTGGCTGCAGCAACCTGACAGGTGAAGTCGTAAAGCTTGATCTTAGCAACCCCAACTGTTACTTGAAATATTATTCTTCCTACCCTCCTCGTGATAACTCCTCGTGTTTGGGTGGTAAGCTAGGTCCTTTAAATGAATTACAACATTTGAATTACCTCAATCTCTCTTACAACACTTTCAGTGGAATGATTCCTCCAGATTTTGGAAATCTGTCAAACTTACACGTCCTTGACCTCAATTCATTTTATTATCCATTTCCTTGGGTCTCTGATTTGAATTGGCTCTCAGGTCTCTCTTCTTTAAAATTCCTTGACTTGACAGGTGTCAATCTTAGTTTGGCAACAACTCATTGGTTGCAAGCTGTCAACATGCTCCCTTCTCTGTCAGAGTTGCACTTGGCTGAAACTGAACTTCAAACCATTCCTCTGTTTCTACCTCATTTGAATTTCACTTCTCTTTCGGTCCTCGATCTAAATTATAATTTTTTTGGTTCTCAAGCACCTCAATGGTTGTTTAACATTAGTACATTTGTGGAGCTTACACTTCAAAGCTGTTTTTCTGAAGGTCCTTTTCCCAGTATAATAGGTTGCAATTTACGCCATTTAGATCTGTCATTCAATGAATTTAATGGTGAAATAAGCGAACTATTAGTAGGGAGTTTCTCTCGATGCCGTACTAGAAGCTTGGAGGAGTTGGTTTTATCAGAGAACCAATTTAGTGGGCAGCTTCCAAATTCATGGGGACACCTTAACAACTCTTTAAGGACACTTGACCTTGATTCAAACTCAATATCAGGCCCACTTCCAACATCCATTGGAGAGTTGTCAAAATTACAGAATTTAAACCTCGGTTACAATAACCTGAATGGCTCCATCCCGAAAAGCCTCGGAAGACTTACGGAACTAAAAGAGTTGCTCCTCAACGGCAATGATTGGGAAGGGGTCCTATCACAAGATCACTTCCAAGGCCTTTCAAAATTGAAAATGTTGTCAATATCAACCATGAACAGAGATTTTGTCCTCAATCTGAGCCTCGACTGGGTCCCTCCATTTAGCTTGGAACTGATATATATTAATGATTACAAGTTAGGTCCCAAATTCCCAAAATGGCTCCAAACTCAAACACAACTTGATACCATATATCTTCAGAATGTTAGCATTTCACAAGCAATACCCAATTGGCTCTGGAAAATGTCTACTCGCATTAGGGCGTTAATACTTTCTTATAACCAAATCGGAGGAATTCTACCCAGTTCTTTAGTATTTCCACCAAACGCGAGAATTGATTTGAGTTTCAATTCCTTAGTGGGCCCACTCCCACTTTGGCCTAATGTGAGTTATCTCAACCTGGCAAACAACTCATTTTCTGGAACAATTCCTATAAATATTGGCCAAATAATGTCTAAATTGCAATCTCTTGATCTCTCTGGGAATAAACTCAATGGTAGCATTCCCTCTTCTCTAGGCCAGATAGACACATTGTATTATCTTTCTCTATCGAAGAACCAATTATCTGGAAAAGTTCATGATCAATGGATGGGTCAAATGTTCGAGGTAATAGATTTATCGGAGAATAATCTATCTGGTAACTTTCCTGCTTCGTTGTATTCTTTACCTAATCTTGTTCAATTGAAATTGAGCAACAATGGATTTTTCGGAAAATTACCTTTTCTGATAAAAATTTGCAAAAATTTAGCCTTTCTTGATCTAGGAGAGAATAAATTCTCAGGGACTATATCAAAATTGATCGGAGAACACCTTTTATCGCTACAAGTGCTACGCATGCGTGCTAACCAATTCAGTGGAAATATTACTAAAAAACTTTGTCGTCTTCAAGAACTCCATGTCTTGGACCTTGCTCAAAACAATTTATCAGGACCAATTCCAGCTTGCTTGAGCCACTTAAATGGAATGAAGTCTAGATACCACAATGAAAACTCGAGATTAGATATCGAGTTGGTTCAAAAGGGAAGTGAATTAGAGTATGATCGAAATATGATTCCGCTTGTATCTTCTATCTTTGGGAAAGATGAGAGGATTTGA

Network for GWHGAAZE001523

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	45	81	1.10E-12
PF13516.7	LRR_6	274	289	0.41
PF13855.7	LRR_8	330	388	5.80E-08
PF00560.34	LRR_1	546	565	0.45
PF00560.34	LRR_1	691	712	1.2

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.331
	SRR3591706	second leaf	0.584
	SRR3591707	mature leaf	0.867
	SRR3591708	Shoot apex	1.187
	SRR3591709	Stem	2.261
	SRR3591710	White floral bud	0.663
	SRR3591711	White flower	2.930
	SRR3591712	Green floral bud	0.567
	SRR3591713	Yellow flower	0.298
SRP173429	SRR8316895	Juvenile bud stage	1.528
	SRR8316896	Juvenile bud stage	1.295
	SRR8316897	Juvenile bud stage	0.334
	SRR8316894	Third green stage	0.490
	SRR8316900	Third green stage	0.340
	SRR8316901	Third green stage	0.589
	SRR8316898	Complete white stage	0.200
	SRR8316899	Complete white stage	1.027
	SRR8316903	Complete white stage	0.528
	SRR8316902	Silver flowering stage	0.122
	SRR8316904	Silver flowering stage	0.351
	SRR8316905	Silver flowering stage	0.035
	SRR8316906	Gold flowering stage	0.239
	SRR8316907	Gold flowering stage	0.169
	SRR8316908	Gold flowering stage	0.615
SRP132670	SRR6706286	Control	2.554
	SRR6706287	Light intensity 50%	1.266
	SRR6706288	Light intensity 20%	0.902
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.140
	CNS0095593	Slightly white alabastrum(diploid) 2	1.062
	CNS0095594	Slightly white alabastrum(diploid) 3	2.761
	CNS0095595	Whole white alabastrum(diploid) 2	3.626
	CNS0095596	Whole white alabastrum(diploid) 3	0.200
	CNS0095597	Whole white alabastrum(diploid) 4	2.715
	CNS0095598	Silvery flower (diploied) 1	1.920
	CNS0095599	Silvery flower (diploied) 2	1.800
	CNS0095600	Silvery flower (diploied) 3	0.559
	CNS0095601	Golden flower (diploid) 1	2.019
	CNS0095602	Golden flower (diploid) 2	1.577
	CNS0095603	Golden flower (diploid) 3	1.617
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.393
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.157
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.487
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.969
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.645
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.067
	CNS0095610	Silvery flower (tetraploid) 1	0.332
	CNS0095611	Silvery flower (tetraploid) 2	1.301
	CNS0095612	Silvery flower (tetraploid) 3	0.615
	CNS0095613	Golden flower (tetraploid) 1	0.016
	CNS0095614	Golden flower (tetraploid) 2	0.197
	CNS0095615	Golden flower (tetraploid) 3	0.028
CRA001975	CRR073297	Stem 1	0.962
	CRR073298	Stem 2	0.570
	CRR073299	Stem 3	0.330
	CRR073300	Leaf 1	0.021
	CRR073301	Leaf 2	0.274
	CRR073302	Leaf 3	0.169
	CRR073303	Juvenile bud 1	0.237
	CRR073304	Juvenile bud 2	0.374
	CRR073305	Juvenile bud 3	0.415
	CRR073306	Third green 1	0.069
	CRR073307	Third green 2	0.057
	CRR073308	Third green 3	0.028
	CRR073309	Second white 1	0.015
	CRR073310	Second white 2	0.012
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.028
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.007
	CRR073315	Gold flowering 1	0.196
	CRR073316	Gold flowering 2	0.543
	CRR073317	Gold flowering 3	0.524
	CRR073318	Tawny withering 1	2.115
	CRR073319	Tawny withering 2	1.299
	CRR073320	Tawny withering 3	0.052