Gene detail

Detail information of GWHGAAZE001527

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009381749.1	6.97035E-85	PREDICTED: LOW QUALITY PROTEIN: ent-kaur-16-ene synthase, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q39548\|KSB_CUCMA	9E-65	Ent-kaur-16-ene synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A022R6Q4\|A0A022R6Q4_ERYGU	9E-71	Uncharacterized protein {ECO:0000313\|EMBL:EYU34535.1}
TAIR10	AT1G79460.1	1E-48	Terpenoid cyclases/Protein prenyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	50102814	50125377	+
GWHAAZE00000001	mRNA	50102814	50125377	+
GWHAAZE00000001	exon	50102814	50102908	+
GWHAAZE00000001	exon	50107224	50107423	+
GWHAAZE00000001	exon	50112074	50112194	+
GWHAAZE00000001	exon	50112275	50112372	+
GWHAAZE00000001	exon	50114205	50114419	+
GWHAAZE00000001	exon	50119576	50119821	+
GWHAAZE00000001	exon	50125042	50125377	+
GWHAAZE00000001	CDS	50102814	50102908	+
GWHAAZE00000001	CDS	50107224	50107423	+
GWHAAZE00000001	CDS	50112074	50112194	+
GWHAAZE00000001	CDS	50112275	50112372	+
GWHAAZE00000001	CDS	50114205	50114419	+
GWHAAZE00000001	CDS	50119576	50119821	+
GWHAAZE00000001	CDS	50125042	50125377	+

Transcript Sequence
>GWHTAAZE001531 ATGATCAGTTACGCCCAAGATTTGGGTTTGAATCTGCCTCTAGACACTGCTTTCTTGGATCTAATGCACCACCATAGAGATCTGCAAATTCAAAGGGTGAAGGGAGGTAGTCTTGCATACATTGCTGAAGGATTTGGTGAATCATATGATTGGAAAGAGATGATAAAGAAAGAGCAAAGAAGTAATGGCTCTATCTTTAATTCACCATCCGCAACGGCAGCTGCTCTTATTCACCTCCCTGATGATAGATGTTTCGAATACTTGCAGTCCGTTTTGAATGTATATGGAAAGGCTGTCCCTACCATGTATCCTTATGATAAATACGCTCGTCTTTGCTTGATTGATACACTCGAGAGTTTGGGAATAGCTCGATACTTTAAATGTGAGATAAAGATCGTTCTTGATGAAACACACAGGTGTTGGCAACAAAGGAATGAAGAGATTTTTCTGGATCCTGCATGTTGTGCGCTTGCATTTCGACTGCTAAAGATGCATGGATATGAAGTTGCATCAAATGCATTGGAAGAATACAATGATCAAGAGCATTTCTTCAAAACATCAAGCCCAGAAATTGCAAACACAAATACAATTATCGAGTTGTACAAGGCTTCAGAAGTCACAACACTAGAAGAAGAACCAATTCTTGAAAATATAAAGAATTGGACAAACAATTTTCTAAAGCGCCAGCTATTGAATCAAGAGTTTTGTGATGATCAATTACTCAAAGAGTGGGTTGAGTTTATCAAGTGTATGATGAAAGAGGTGGAGTGGTGGAGGGAGAAGACAACACCAAGCATGGATGAATATGTCAAAAATGGGAGAGCGACTGTTGGCGTTGGACTTTATTGCATTTGCTTCTATTTTCTTGGAGTGGAATTTTCACAAGATACCATGTCAACTCCAGAATTTCAATCTCTTTACAAGCATGGGGGTCTTTTTATACGTCTTCTTAACGATTGTCAAGGCATCAAGGAGACGGACAAAGTGCAAAGGAAAATCAACGGTTGTTGGTTACTAATGGAAGACAAAAATGGAGCCATAACAGAAGAGGAGGCCGTGAAGCAAGTAAGAAGGATGGTGGAGAATAGTAGGAGAGAAGTGTTAAGAATGTCACTGGTTCAAACTGACAAAAGCGTGATTCCATGGGCAATAAGAGATGCGTTTTTCAAAATGATCCAAATTGGCCAGTATTTGTACGGCAATAGCACCGACGAATACAGGAGTCCAATCAAAAATTTTGATGACATTAAAGCTATTCTTTATGAGCCCATCAGTATCTCCACAAATTTGCCAAAGGAAAAGAGTTATTAA

Network for GWHGAAZE001527

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	50	234	4.50E-43
PF19086.1	Terpene_syn_C_2	189	366	1.10E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04121	E4.2.3.19	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.028
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.033
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.008
	SRR6706288	Light intensity 20%	0.010
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.051
	CNS0095593	Slightly white alabastrum(diploid) 2	0.006
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.109
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.029
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.030
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.035
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.008
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000