Detail information of GWHGAAZE001569


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009777198.10PREDICTED: probable polyamine oxidase 2 isoform X1 [Nicotiana sylvestris]
Swissprottr|Q9LYT1|PAO3_ARATH0Polyamine oxidase 3
trEMBLtr|E0CTZ8|E0CTZ8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI22064.3}
TAIR10AT2G43020.10polyamine oxidase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5236798352372522-
GWHAAZE00000001mRNA5236798352372522-
GWHAAZE00000001exon5236798352368270-
GWHAAZE00000001exon5236895252369381-
GWHAAZE00000001exon5236990952370006-
GWHAAZE00000001exon5237067352370775-
GWHAAZE00000001exon5237087352370958-
GWHAAZE00000001exon5237105952371146-
GWHAAZE00000001exon5237157152371684-
GWHAAZE00000001exon5237180052371888-
GWHAAZE00000001exon5237222352372341-
GWHAAZE00000001exon5237248652372522-
GWHAAZE00000001CDS5237248652372522-
GWHAAZE00000001CDS5237222352372341-
GWHAAZE00000001CDS5237180052371888-
GWHAAZE00000001CDS5237157152371684-
GWHAAZE00000001CDS5237105952371146-
GWHAAZE00000001CDS5237087352370958-
GWHAAZE00000001CDS5237067352370775-
GWHAAZE00000001CDS5236990952370006-
GWHAAZE00000001CDS5236895252369381-
GWHAAZE00000001CDS5236798352368270-
Transcript Sequence

Network for GWHGAAZE001569

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01593.25Amino_oxidase374575.00E-90
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17839PAO4, PAO3, PAO2 Metabolic pathways map01100
Arginine and proline metabolismmap00330
beta-Alanine metabolismmap00410

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.926
SRR3591706second leaf36.475
SRR3591707mature leaf31.425
SRR3591708Shoot apex21.955
SRR3591709Stem9.993
SRR3591710White floral bud31.894
SRR3591711White flower11.410
SRR3591712Green floral bud16.831
SRR3591713Yellow flower8.667
SRP173429 SRR8316895Juvenile bud stage 22.801
SRR8316896Juvenile bud stage 28.610
SRR8316897Juvenile bud stage 6.699
SRR8316894Third green stage 7.051
SRR8316900Third green stage 14.068
SRR8316901Third green stage 20.440
SRR8316898Complete white stage 13.619
SRR8316899Complete white stage 38.640
SRR8316903Complete white stage 28.046
SRR8316902Silver flowering stage1.968
SRR8316904Silver flowering stage3.482
SRR8316905Silver flowering stage1.144
SRR8316906Gold flowering stage 3.554
SRR8316907Gold flowering stage 3.772
SRR8316908Gold flowering stage 3.423
SRP132670SRR6706286Control14.850
SRR6706287Light intensity 50%16.934
SRR6706288Light intensity 20%14.907
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.902
CNS0095593Slightly white alabastrum(diploid) 29.663
CNS0095594Slightly white alabastrum(diploid) 310.303
CNS0095595Whole white alabastrum(diploid) 26.410
CNS0095596Whole white alabastrum(diploid) 35.406
CNS0095597Whole white alabastrum(diploid) 413.652
CNS0095598Silvery flower (diploied) 133.275
CNS0095599Silvery flower (diploied) 244.111
CNS0095600Silvery flower (diploied) 311.669
CNS0095601Golden flower (diploid) 127.105
CNS0095602Golden flower (diploid) 215.178
CNS0095603Golden flower (diploid) 313.780
CNS0095604Slightly white alabastrum(tetraploid) 112.492
CNS0095605Slightly white alabastrum(tetraploid) 28.968
CNS0095606Slightly white alabastrum(tetraploid) 333.215
CNS0095607Whole white alabastrum(tetraploid) 120.576
CNS0095608Whole white alabastrum(tetraploid) 25.394
CNS0095609Whole white alabastrum(tetraploid) 318.649
CNS0095610Silvery flower (tetraploid) 15.922
CNS0095611Silvery flower (tetraploid) 211.826
CNS0095612Silvery flower (tetraploid) 37.389
CNS0095613Golden flower (tetraploid) 12.019
CNS0095614Golden flower (tetraploid) 25.296
CNS0095615Golden flower (tetraploid) 32.879
CRA001975CRR073297Stem 138.294
CRR073298Stem 235.202
CRR073299Stem 341.494
CRR073300Leaf 126.861
CRR073301Leaf 222.518
CRR073302Leaf 322.951
CRR073303Juvenile bud 120.493
CRR073304Juvenile bud 227.616
CRR073305Juvenile bud 331.956
CRR073306Third green 112.060
CRR073307Third green 212.433
CRR073308Third green 311.888
CRR073309Second white 15.571
CRR073310Second white 22.801
CRR073311Second white 32.564
CRR073312Silver flowering 15.305
CRR073313Silver flowering 27.067
CRR073314Silver flowering 38.070
CRR073315Gold flowering 15.269
CRR073316Gold flowering 24.238
CRR073317Gold flowering 34.595
CRR073318Tawny withering 17.127
CRR073319Tawny withering 210.596
CRR073320Tawny withering 33.591