Gene detail

Detail information of GWHGAAZE001579

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008228883.1	3.20368E-44	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
Swissprot	tr\|Q9LU24\|FB145_ARATH	0.00000004	Putative F-box protein At3g16210
trEMBL	tr\|M5WUE8\|M5WUE8_PRUPE	1E-43	Uncharacterized protein {ECO:0000313\|EMBL:EMJ17309.1}
TAIR10	AT4G12560.2	1E-13	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	53061570	53062790	+
GWHAAZE00000001	mRNA	53061570	53062790	+
GWHAAZE00000001	exon	53061570	53061690	+
GWHAAZE00000001	exon	53061816	53062449	+
GWHAAZE00000001	exon	53062544	53062790	+
GWHAAZE00000001	CDS	53061570	53061690	+
GWHAAZE00000001	CDS	53061816	53062449	+
GWHAAZE00000001	CDS	53062544	53062790	+

Transcript Sequence
>GWHTAAZE001583 ATGAACGAAATGTGGAACACTTTACCCGCGGAAGTTTTTAGCGAAATCCTCAGCAGAATCCCCTTAAAGACTCTGCTGCAATGCACAACTTGTCATTGTGCACAAGTGTCTGCAAATCACGAGCACTACTCTTTACACTTGGATAATGATACACTTGATGAATTTGCTAAATTGGATTTCCCATTCGTTAGCAAAAATTGGTGCTTTAATATTGTTGGTATCTGTAAGGGATTAGTAAGCTTGTCTGATGATCATGGAACTAACATAGATTTAATCCTATGGAACCCCTCTCTTAAAAAATCAGTCAGCGTTCCGAATCCCAGCTTTGTATGTGAGTGGCATGGTCATTTCGGATTTGGAATCGACCCCGTAGCAATTGACTACAAGATTGTGAGGCTTGTGTATCTCGATAAATATAGACCGCCAGTGGTAGAGCTTTTCGAGCTTAGTACCGGCTCTTGGCGAAATATTAATTCCAGCAACTTTGGTTATATTATTTTGCTTGGTGCTCAGCAGGCCTTTTTGAATGGTGTAGTCCATTGGACTGGATATAATCCGAACAAGGGTGGTGGTAGTTTGCATATTCTGATCGTGTCATTTGACCGGAGAAACGAGTCACTAGGTGTTGTACAGGTGCCTCTTTGTGTACAAGAAGATCGGGACCATTGGTTCATGCGTGTCACAGTATTTGGAGAATGGCTTGCTTTTTTACATTCTGACGGAGATCGTTCCTGGGGCCTATGGGTGATGAAGGAGTATGTGTACTCTGGTGGGTGGGATTTGGTTTCCTATGATCGTAAAAGTAAATTGACCAAGAATCTCGACAAGTTTGGAATGATATGCTCGTTCAATGTAAATACTTACAAGGAGAGCCTTGTCTTAGTTAAGGGCTTAAATGAAGTTTTGGGTAGGAAGGAAAAATCCGGTGGTGCAGCCACTTGTGAGGAGACACCCATCCTGCCTAAAGAAGAAAATGAGGTTAAGGGGAAGAGAAAAATTTAA

Network for GWHGAAZE001579

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.242
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.235
	SRR8316897	Juvenile bud stage	0.041
	SRR8316894	Third green stage	0.068
	SRR8316900	Third green stage	0.418
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.061
	SRR6706287	Light intensity 50%	0.066
	SRR6706288	Light intensity 20%	0.121
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.211
	CNS0095593	Slightly white alabastrum(diploid) 2	0.024
	CNS0095594	Slightly white alabastrum(diploid) 3	0.172
	CNS0095595	Whole white alabastrum(diploid) 2	0.151
	CNS0095596	Whole white alabastrum(diploid) 3	0.140
	CNS0095597	Whole white alabastrum(diploid) 4	0.206
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.034
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.030
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.052
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.270
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.034
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.113
	CRR073299	Stem 3	0.100
	CRR073300	Leaf 1	0.180
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.059
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.026
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.041
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000