Gene detail

Detail information of GWHGAAZE001595

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354237.1	1.49108E-19	PREDICTED: protein NLP3-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q8RWY4\|NLP6_ARATH	0.000000009	Protein NLP6
trEMBL	tr\|A0A068V571\|A0A068V571_COFCA	3E-19	Coffea canephora DH200=94 genomic scaffold, scaffold_102 {ECO:0000313\|EMBL:CDP15664.1}
TAIR10	AT1G64530.1	0.00000002	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	53836565	53838821	-
GWHAAZE00000001	mRNA	53836565	53838821	-
GWHAAZE00000001	exon	53836565	53837049	-
GWHAAZE00000001	exon	53837337	53837778	-
GWHAAZE00000001	exon	53838705	53838821	-
GWHAAZE00000001	CDS	53838705	53838821	-
GWHAAZE00000001	CDS	53837337	53837778	-
GWHAAZE00000001	CDS	53836565	53837049	-

Transcript Sequence
>GWHTAAZE001599 ATGCGTATGAGAGAAATTTACAGGAATTTTTCAGACTTCTCGGAGATCCCCCCCTCTACTCCAAATTTAATGGCGGCTTATTTTCCTCTCGAGCCCACCCTCTTCGCCACTACTAAGGACACAGTAACATCAGCAACATCGCAATTAGGTGAACAGGCGAATAATGATCTCAGCTTGAGCCTTGAGTGTACCAAATCAACTGAACCTACCACTACCACTGCCACTGCCACCGCCAATACCGATAGATCTTCACATAATACCGGTCCTAATGAATTTGTGTTAGGGGTGCTGGGGTCTGATTGCCCTGGACAACCAGGAATATCAGAATGTGATGTTGCACCCACGCTAAATAAAGGAGGAGGAGGAGGAGGAGATAATAATAATAATAATAATAATAATTTACCTGTTACTTCTACTGTTCCTGTTGCTTCTGCTATTACAGACAAGCCTGAGATAAGGAAAAGGGGAAGACCAACCGGTGGTAGCTCAACCATTAGTTTAGAACAACTCCAACAACAATTTGGAAAGACTCTTCAAGAAGCTGCCAATAGCTTTAATGTTAGTGTTTCTACGTTGAAGCGTGTCACACGGGGGTATGAGATCTCCCCTTGGCCAGGTCCGAAGAAAAATAACAGGGTTGCTAGTTCTCCAACAAACCATACCACTTCAAGTGAACCGGATCCTAAGAAATTAGAAGCCACGGAAGCAACTAATGTTATTCAGACCTGTCCACCACCTGCTACAGAATTAGCAATGCAAGATGCGACGCGTATTACCTTTAAGGTCCACTTTGGGGCGCAGAGTATCTTAAGGTTTGAACTACCTTCTACGTTGAAAATGGTAGATGTGAAGCAACAAGTGGCAAAAAGACTAAAATTAAAGATGGGAAGCTTTAACATTAGTTATCGAGACGAAGATGAGGGTGATTGGGTTTTAATAACCCGCGATGATGACTTGCTTAGAGCAGCACTGCACCGTACAACAATCCGAATACAAGTTGAGCCAATCACCAATTTGACCACCTTGACTTCTAAATATAAATAA

Network for GWHGAAZE001595

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	164	206	8.30E-12
PF00564.25	PB1	258	333	4.40E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.090
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.260
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.140
	SRR3591711	White flower	0.222
	SRR3591712	Green floral bud	1.131
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.714
	SRR8316896	Juvenile bud stage	0.691
	SRR8316897	Juvenile bud stage	0.097
	SRR8316894	Third green stage	0.599
	SRR8316900	Third green stage	1.333
	SRR8316901	Third green stage	1.342
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.637
	SRR8316903	Complete white stage	0.049
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.051
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.749
	SRR6706287	Light intensity 50%	1.384
	SRR6706288	Light intensity 20%	1.625
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.780
	CNS0095593	Slightly white alabastrum(diploid) 2	1.175
	CNS0095594	Slightly white alabastrum(diploid) 3	0.604
	CNS0095595	Whole white alabastrum(diploid) 2	0.857
	CNS0095596	Whole white alabastrum(diploid) 3	0.793
	CNS0095597	Whole white alabastrum(diploid) 4	0.958
	CNS0095598	Silvery flower (diploied) 1	0.052
	CNS0095599	Silvery flower (diploied) 2	0.250
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.480
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.024
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.127
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.117
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.069
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.989
	CRR073298	Stem 2	1.122
	CRR073299	Stem 3	0.708
	CRR073300	Leaf 1	1.077
	CRR073301	Leaf 2	0.683
	CRR073302	Leaf 3	0.653
	CRR073303	Juvenile bud 1	1.041
	CRR073304	Juvenile bud 2	0.533
	CRR073305	Juvenile bud 3	0.229
	CRR073306	Third green 1	0.513
	CRR073307	Third green 2	0.249
	CRR073308	Third green 3	0.037
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.045
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.072
	CRR073317	Gold flowering 3	0.202
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000