Gene detail

Detail information of GWHGAAZE001608

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002281926.1	PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Vitis vinifera]
Swissprot	tr\|Q9FMU5\|UTP18_ARATH	U3 small nucleolar RNA-associated protein 18 homolog
trEMBL	tr\|F6GXL7\|F6GXL7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44703.1}
TAIR10	AT5G14050.1	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	54362055	54363551	-
GWHAAZE00000001	mRNA	54362055	54363551	-
GWHAAZE00000001	exon	54363119	54363551	-
GWHAAZE00000001	exon	54362055	54363082	-
GWHAAZE00000001	CDS	54363119	54363551	-
GWHAAZE00000001	CDS	54362055	54363082	-

Transcript Sequence
>GWHTAAZE001612 AAAAGACTCGAGAACTTTTTGTTTGGCTCTTTGTACTCCCCCATTGAGTTTGGGAAGAGTGAGGTGGAAGAAGTGAGAGAGGGGGCTGAAAACTCTGCATTATTCTTTACTGATCGGTCTGCTAATAGTGCGTTGTCTGTTTATGAAGAGGATGCAGAATTTCCATTAGAAAGTAAGGCTGAAGAGGAAAGTAAGCAAAGGAAACCCGTATGGTTTGATGAAGAGGAAGAGAAAACCAGTATAAATATAGCCAAAGTGAACAGGTTAAGGAAGCTGAGGAAAGAAGAGGACGAGAGTGTAATTTCTGGCTCGGCTTACGTGTCAAGATTGAGGGCTCAACATGTTAAGCTGAACCCGAGCACCGAGTGGGCCCAACTTGATTCACGGGACAGAAAGTACAGCTCTGATGGCGAAGATTCTGACGAAGAAAACGGTGTCGATGATATCCTTCGAACTAATGAAGATCTTGTTGTAAAGGGCAGTGGAAAGCTGCTGCCTGGACTTTTAGAGTACTCGAGGCTAGTTGATGCAAATGCAGAGGATCCTTCCAATGGCCCTATTACTTCGATTCAGTTCCATAGAAATGCTCAGTTGCTTCTTGCTGGTGGATTGGATAAAAGACTCAGGTTTTTCCAGATTGATGGTAAACGAAACACCAAGATTCAAAGTGTGTTCATTGAGGATTGTCCCATTCGAAAGGCTTCTTTCTTACCAGATGGGTCGCAGGTGATTGTATCAGGAAGAAGAAAGTTCTTCTACAGCTTCGATTTAGTGAAGGCGAAGATGGACAAAATAGGCCCTTTAACCGGTAGGGAGGAGAAGAGCTTGGAATCTTTTGAGGTTTCGCCTGATTCTAAAACAATTGCTTTTATTGGCAACGAAGGGTATATTTTGCTAGTTTCATCCAAAACGAAGGAACTGATTGGAACACTCAAGATGAATGGAACCGTCCGTTCTTTATCTTTTGCGAACGATGGTCAAAAATTGCTGAGCTCGGGTGGTGACGGGCAGATTTATCATTGGGATTTGAGAACAAGGACATGCTTTCATAAGGGTGTTGATGAAGGATGCATAAATGGCACGGCTCTTTGTACTTCTCCAAGTGGGAATTTGTTTGCTGCCGGTTCGGATAGTGGGATTGTGAACATTTACAATAATGACGATTTCTTAGGGGGCAAGAGAAAACCAATCAAAACGATTGAGAATCTAACCACGAAGGTGGATTTTATGAAATTCAACAATGATGCTCAGATTCTAGCCGTTAGTTCGAGCATGAAGAAGAATAGTTTGAAGCTGATTCACATTCCTTCGTTTACTGTTTTCTCAAACTGGCCACCGCCAAATTGGACCATACATTATCCTCGGTGTTTGGATTTCAGCCCTGGTGGTGGGTTCATGGCTATGGCGAATTCTGCCGGGAAAGTTTTATTATACAAGTTGCATCACTATCATCATGCATAG

Network for GWHGAAZE001608

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	185	211	0.14
PF00400.33	WD40	308	342	0.01
PF00400.33	WD40	358	385	0.031

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14553	UTP18	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.592
	SRR3591706	second leaf	6.948
	SRR3591707	mature leaf	5.764
	SRR3591708	Shoot apex	8.451
	SRR3591709	Stem	11.960
	SRR3591710	White floral bud	9.572
	SRR3591711	White flower	12.610
	SRR3591712	Green floral bud	9.907
	SRR3591713	Yellow flower	8.993
SRP173429	SRR8316895	Juvenile bud stage	9.941
	SRR8316896	Juvenile bud stage	13.234
	SRR8316897	Juvenile bud stage	5.810
	SRR8316894	Third green stage	4.794
	SRR8316900	Third green stage	14.532
	SRR8316901	Third green stage	15.048
	SRR8316898	Complete white stage	7.989
	SRR8316899	Complete white stage	26.290
	SRR8316903	Complete white stage	14.827
	SRR8316902	Silver flowering stage	7.582
	SRR8316904	Silver flowering stage	8.504
	SRR8316905	Silver flowering stage	4.193
	SRR8316906	Gold flowering stage	13.855
	SRR8316907	Gold flowering stage	13.353
	SRR8316908	Gold flowering stage	13.362
SRP132670	SRR6706286	Control	14.134
	SRR6706287	Light intensity 50%	13.605
	SRR6706288	Light intensity 20%	13.546
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.419
	CNS0095593	Slightly white alabastrum(diploid) 2	11.613
	CNS0095594	Slightly white alabastrum(diploid) 3	10.060
	CNS0095595	Whole white alabastrum(diploid) 2	10.516
	CNS0095596	Whole white alabastrum(diploid) 3	9.479
	CNS0095597	Whole white alabastrum(diploid) 4	8.553
	CNS0095598	Silvery flower (diploied) 1	13.132
	CNS0095599	Silvery flower (diploied) 2	11.265
	CNS0095600	Silvery flower (diploied) 3	18.808
	CNS0095601	Golden flower (diploid) 1	11.660
	CNS0095602	Golden flower (diploid) 2	13.373
	CNS0095603	Golden flower (diploid) 3	14.469
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.775
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.858
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.989
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.580
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.755
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.065
	CNS0095610	Silvery flower (tetraploid) 1	12.985
	CNS0095611	Silvery flower (tetraploid) 2	9.141
	CNS0095612	Silvery flower (tetraploid) 3	15.115
	CNS0095613	Golden flower (tetraploid) 1	7.400
	CNS0095614	Golden flower (tetraploid) 2	10.205
	CNS0095615	Golden flower (tetraploid) 3	8.432
CRA001975	CRR073297	Stem 1	12.680
	CRR073298	Stem 2	11.358
	CRR073299	Stem 3	12.631
	CRR073300	Leaf 1	15.895
	CRR073301	Leaf 2	13.633
	CRR073302	Leaf 3	13.242
	CRR073303	Juvenile bud 1	16.120
	CRR073304	Juvenile bud 2	13.239
	CRR073305	Juvenile bud 3	22.415
	CRR073306	Third green 1	14.366
	CRR073307	Third green 2	14.507
	CRR073308	Third green 3	12.627
	CRR073309	Second white 1	13.453
	CRR073310	Second white 2	17.126
	CRR073311	Second white 3	15.409
	CRR073312	Silver flowering 1	22.150
	CRR073313	Silver flowering 2	22.204
	CRR073314	Silver flowering 3	20.642
	CRR073315	Gold flowering 1	7.032
	CRR073316	Gold flowering 2	10.157
	CRR073317	Gold flowering 3	5.119
	CRR073318	Tawny withering 1	14.086
	CRR073319	Tawny withering 2	12.812
	CRR073320	Tawny withering 3	14.188