Detail information of GWHGAAZE001622


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKEH23694.11.30472E-17SCF ubiquitin ligase, SKP1 component [Medicago truncatula]
Swissprottr|Q9FHW7|SKP1B_ARATH2E-16SKP1-like protein 1B
trEMBLtr|A0A072U1V4|A0A072U1V4_MEDTR5E-18SCF ubiquitin ligase, SKP1 component {ECO:0000313|EMBL:KEH23694.1}
TAIR10AT5G42190.11E-13E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5481665754816932-
GWHAAZE00000001mRNA5481665754816932-
GWHAAZE00000001exon5481665754816932-
GWHAAZE00000001CDS5481665754816932-
Transcript Sequence

Network for GWHGAAZE001622

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01466.20Skp142640.00011
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilySKP1

KEGG pathway

KO Enzyme pathway mapID
K03094SKP1, CBF3D Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
Wnt signaling pathwaymap04310
Hedgehog signaling pathway - flymap04341
TGF-beta signaling pathwaymap04350
Cell cyclemap04110
Cell cycle - yeastmap04111
Oocyte meiosismap04114
Circadian rhythmmap04710

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.115
SRR3591706second leaf0.000
SRR3591707mature leaf0.404
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud1.250
SRR3591711White flower1.339
SRR3591712Green floral bud1.057
SRR3591713Yellow flower3.101
SRP173429 SRR8316895Juvenile bud stage 0.797
SRR8316896Juvenile bud stage 1.111
SRR8316897Juvenile bud stage 0.809
SRR8316894Third green stage 0.392
SRR8316900Third green stage 0.792
SRR8316901Third green stage 0.231
SRR8316898Complete white stage 0.607
SRR8316899Complete white stage 0.457
SRR8316903Complete white stage 0.472
SRR8316902Silver flowering stage0.725
SRR8316904Silver flowering stage1.490
SRR8316905Silver flowering stage0.272
SRR8316906Gold flowering stage 3.080
SRR8316907Gold flowering stage 3.179
SRR8316908Gold flowering stage 3.809
SRP132670SRR6706286Control1.163
SRR6706287Light intensity 50%0.624
SRR6706288Light intensity 20%0.660
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.649
CNS0095593Slightly white alabastrum(diploid) 21.235
CNS0095594Slightly white alabastrum(diploid) 31.839
CNS0095595Whole white alabastrum(diploid) 20.363
CNS0095596Whole white alabastrum(diploid) 30.739
CNS0095597Whole white alabastrum(diploid) 40.345
CNS0095598Silvery flower (diploied) 13.558
CNS0095599Silvery flower (diploied) 21.207
CNS0095600Silvery flower (diploied) 31.070
CNS0095601Golden flower (diploid) 13.417
CNS0095602Golden flower (diploid) 21.826
CNS0095603Golden flower (diploid) 32.713
CNS0095604Slightly white alabastrum(tetraploid) 10.718
CNS0095605Slightly white alabastrum(tetraploid) 20.812
CNS0095606Slightly white alabastrum(tetraploid) 31.197
CNS0095607Whole white alabastrum(tetraploid) 10.228
CNS0095608Whole white alabastrum(tetraploid) 20.117
CNS0095609Whole white alabastrum(tetraploid) 30.445
CNS0095610Silvery flower (tetraploid) 11.398
CNS0095611Silvery flower (tetraploid) 21.736
CNS0095612Silvery flower (tetraploid) 31.021
CNS0095613Golden flower (tetraploid) 11.195
CNS0095614Golden flower (tetraploid) 22.351
CNS0095615Golden flower (tetraploid) 31.197
CRA001975CRR073297Stem 10.930
CRR073298Stem 21.566
CRR073299Stem 30.859
CRR073300Leaf 10.236
CRR073301Leaf 20.814
CRR073302Leaf 30.130
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.286
CRR073307Third green 20.452
CRR073308Third green 30.519
CRR073309Second white 10.679
CRR073310Second white 21.460
CRR073311Second white 30.327
CRR073312Silver flowering 10.469
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.034
CRR073315Gold flowering 10.914
CRR073316Gold flowering 21.412
CRR073317Gold flowering 30.643
CRR073318Tawny withering 12.750
CRR073319Tawny withering 22.745
CRR073320Tawny withering 30.481