Gene detail

Detail information of GWHGAAZE001627

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17358.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q93W93\|FBK22_ARATH	0	F-box/kelch-repeat protein At1g55270
trEMBL	tr\|A0A068VCE3\|A0A068VCE3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_155 {ECO:0000313\|EMBL:CDP17358.1}
TAIR10	AT1G55270.1	2E-151	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	55020905	55022089	+
GWHAAZE00000001	mRNA	55020905	55022089	+
GWHAAZE00000001	exon	55020905	55022089	+
GWHAAZE00000001	CDS	55020905	55022089	+

Transcript Sequence
>GWHTAAZE001631 ATGCGGGGATCAAAACTTTGCTTCCAGCCTGACATCAACCCTCGAGAACACAAGGCTAAGAAAAGCTGCAAAAGAGACCAGACCAAGGTCCAGAACCCCCTCATCCCCTGCTTACCGGATGATCTGGCCATAGCCTGTTTGATCCGAGTCCCCCGAGTCGATCATAACAAGCTCCGGGTAGTTTGCAAGCAGTGGTACCGGCTTCTCTCCGGAAACTTCTTTTATTCCCTTAGAAAAAGCCTTGGAATGGCCGAAGAGTGGGTTTATGTGATCAAAAGGGACCCTGATGGATGTCTTTCTTGGCTTGCTTTCGACCCTACGTACCAGCTTTGGCAACCACTTCCACCGATCCCCATAGTATACAGTGAAGCCATTGGGTTCGGTTGTGCCGTTCTAAGTGGTTGCCACTTGTACTTATTTGGTGGGAAGGACCGACTTGAAGGGTCAATGAGCAGGGTCATTTTCTACAATGCTAGAACTAATAAATGGCATAGGGCACCCAATATGCTTCGAAAACGGCGTTTCTTTGGCTCATGTGTTATAAACAACCATCTGTATGTAGCCGGAGGTGAATGTGAGGGAGCCCAAATTACCCTTAGGTCAACCGAAGTTTATGACCCGAACCAAAACTGCTGGACGTTTGCTTCGGAGATGAGTACAGGTATGGTGCCCTTTATTGGGGTTGTTTATGGTGGAAAATGGTACCTAAAAGGACTTGGGTCCGACGGAGGGGTTATTAGTGAAGCCTATATCCTAGAAACAAACACGTGGACCCCTGTCAGTGATCGGATAGTCAATGGTTTGCGGAATCTGAGCATCTCGATGAATGGGAAGCTCTATGCATTGGGTTGCCCTGATGGGTGTAAGCTTAGGGTTTATGAGGAAACTGAAAATTCGTGGAAGAGATCTATTGATAGTAAGATTCATTTTGGGGGATCTAGTGCTTTGGAAGCTGCGGGTCTTGTTACTCTTAATGGCAAGATTTGTATTGTCCGTAACGACTTGAGCCTTAGTCTAGTTGATGTATCGATCCTTGATAAAGGAGTAGAGAGTAATCCTTTTCTTTGGGAAAATATTGCTGGGAAAGGTCACTTTAGGACACCTTTTACAAATTTATGGTCGAGTATTGACGGTCAAACTAGATCGATGGGTCATATTGTGCATTGTCATGTGCTCCAAGCATGA

Network for GWHGAAZE001627

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	35	72	4.30E-06
PF01344.26	Kelch_1	129	169	1.90E-05
PF01344.26	Kelch_1	173	219	2.60E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.316
	SRR3591706	second leaf	1.998
	SRR3591707	mature leaf	2.563
	SRR3591708	Shoot apex	4.001
	SRR3591709	Stem	3.325
	SRR3591710	White floral bud	5.451
	SRR3591711	White flower	5.296
	SRR3591712	Green floral bud	6.182
	SRR3591713	Yellow flower	5.048
SRP173429	SRR8316895	Juvenile bud stage	4.467
	SRR8316896	Juvenile bud stage	6.304
	SRR8316897	Juvenile bud stage	3.703
	SRR8316894	Third green stage	2.259
	SRR8316900	Third green stage	7.532
	SRR8316901	Third green stage	7.276
	SRR8316898	Complete white stage	3.025
	SRR8316899	Complete white stage	11.933
	SRR8316903	Complete white stage	4.930
	SRR8316902	Silver flowering stage	3.085
	SRR8316904	Silver flowering stage	4.309
	SRR8316905	Silver flowering stage	1.549
	SRR8316906	Gold flowering stage	7.084
	SRR8316907	Gold flowering stage	7.314
	SRR8316908	Gold flowering stage	7.466
SRP132670	SRR6706286	Control	6.040
	SRR6706287	Light intensity 50%	5.688
	SRR6706288	Light intensity 20%	7.229
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.104
	CNS0095593	Slightly white alabastrum(diploid) 2	6.016
	CNS0095594	Slightly white alabastrum(diploid) 3	6.209
	CNS0095595	Whole white alabastrum(diploid) 2	5.125
	CNS0095596	Whole white alabastrum(diploid) 3	4.281
	CNS0095597	Whole white alabastrum(diploid) 4	5.342
	CNS0095598	Silvery flower (diploied) 1	4.451
	CNS0095599	Silvery flower (diploied) 2	4.083
	CNS0095600	Silvery flower (diploied) 3	6.724
	CNS0095601	Golden flower (diploid) 1	6.630
	CNS0095602	Golden flower (diploid) 2	7.644
	CNS0095603	Golden flower (diploid) 3	7.723
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.321
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.556
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.254
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.147
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.615
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.058
	CNS0095610	Silvery flower (tetraploid) 1	6.906
	CNS0095611	Silvery flower (tetraploid) 2	6.177
	CNS0095612	Silvery flower (tetraploid) 3	6.345
	CNS0095613	Golden flower (tetraploid) 1	3.994
	CNS0095614	Golden flower (tetraploid) 2	7.993
	CNS0095615	Golden flower (tetraploid) 3	8.247
CRA001975	CRR073297	Stem 1	6.715
	CRR073298	Stem 2	5.447
	CRR073299	Stem 3	7.425
	CRR073300	Leaf 1	7.408
	CRR073301	Leaf 2	6.426
	CRR073302	Leaf 3	5.329
	CRR073303	Juvenile bud 1	6.003
	CRR073304	Juvenile bud 2	5.694
	CRR073305	Juvenile bud 3	8.159
	CRR073306	Third green 1	3.815
	CRR073307	Third green 2	2.743
	CRR073308	Third green 3	3.463
	CRR073309	Second white 1	3.531
	CRR073310	Second white 2	3.459
	CRR073311	Second white 3	3.243
	CRR073312	Silver flowering 1	6.372
	CRR073313	Silver flowering 2	5.660
	CRR073314	Silver flowering 3	3.400
	CRR073315	Gold flowering 1	2.590
	CRR073316	Gold flowering 2	3.690
	CRR073317	Gold flowering 3	2.600
	CRR073318	Tawny withering 1	5.469
	CRR073319	Tawny withering 2	4.905
	CRR073320	Tawny withering 3	3.975