Gene detail

Detail information of GWHGAAZE001635

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006348226.1	7.26423E-82	PREDICTED: E3 ubiquitin-protein ligase RING1-like isoform X3 [Solanum tuberosum]
Swissprot	tr\|P0CH30\|RING1_GOSHI	1E-43	E3 ubiquitin-protein ligase RING1
trEMBL	tr\|M1BJ75\|M1BJ75_SOLTU	3E-82	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400046527}
TAIR10	AT5G56340.1	3E-56	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	55325951	55326733	+
GWHAAZE00000001	mRNA	55325951	55326733	+
GWHAAZE00000001	exon	55325951	55326178	+
GWHAAZE00000001	exon	55326212	55326346	+
GWHAAZE00000001	exon	55326392	55326733	+
GWHAAZE00000001	CDS	55325951	55326178	+
GWHAAZE00000001	CDS	55326212	55326346	+
GWHAAZE00000001	CDS	55326392	55326733	+

Transcript Sequence
>GWHTAAZE001639 ATGATGAGCAATCCCAGTCGTCAACGCAGACTCAGGCGTTTGGAGTTTGGAGATGACGACGACGACGATAATGATAATGGTAACGATGATGATGATGATTATGAAGCTCGCAATCATTACGAACACGACCACCGCCGCCACCACCACCACCACCGTCACTCAGACAGTGAAAGTGAACTAGATAGGGAACTGGAGGCCATCATACGGCGGAGGAGGATGAGGAGGAGGGGCATTCGAGCTGGAATGTTATCTGAATCAGATAATTCTGGAAGCGAGGTTAGAGATAGGAGCAGTGGAGAGAATAATGGGGAGAGGGAGCACGTAATTCTAATTAACCCGTTCAACCAGACTGTCATAGTGCAGAATTCTCGGAACCACCACCACCACCCCATTGGGTCTTTGGGTGATTACTTCATAGGTCCTGGCTTAGATTTGTTGTTGCAGCATTTGGCAGAAAATGATCCGAATAGGTATGGGAGCCCACCTGCGCGAAAAGAAGCGGTGGAAGCGATGCCAAGCGTGAAAATAGAGCAGAGTTTTCAGTGTAGCGTTTGCTTGGAAGATTTCGAGATTGGGGGTGAAGCAAAGGAGATGCCATGTAAACATAGGTTCCACAGCGCGTGTATTTTGCCGTGGCTGGATCTTCATAGTTCTTGTCCTGTTTGCAGGTATCAGTTGCCTTCTTCTGACGATGATGAATCCAAG

Network for GWHGAAZE001635

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0114

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	181	223	3.40E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	83.279
	SRR3591706	second leaf	58.884
	SRR3591707	mature leaf	118.814
	SRR3591708	Shoot apex	76.190
	SRR3591709	Stem	107.950
	SRR3591710	White floral bud	104.896
	SRR3591711	White flower	132.311
	SRR3591712	Green floral bud	65.503
	SRR3591713	Yellow flower	124.028
SRP173429	SRR8316895	Juvenile bud stage	29.395
	SRR8316896	Juvenile bud stage	48.513
	SRR8316897	Juvenile bud stage	16.869
	SRR8316894	Third green stage	21.521
	SRR8316900	Third green stage	56.325
	SRR8316901	Third green stage	59.318
	SRR8316898	Complete white stage	42.991
	SRR8316899	Complete white stage	123.776
	SRR8316903	Complete white stage	77.611
	SRR8316902	Silver flowering stage	55.165
	SRR8316904	Silver flowering stage	65.742
	SRR8316905	Silver flowering stage	37.771
	SRR8316906	Gold flowering stage	143.400
	SRR8316907	Gold flowering stage	127.171
	SRR8316908	Gold flowering stage	166.702
SRP132670	SRR6706286	Control	100.047
	SRR6706287	Light intensity 50%	89.003
	SRR6706288	Light intensity 20%	82.669
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.550
	CNS0095593	Slightly white alabastrum(diploid) 2	46.857
	CNS0095594	Slightly white alabastrum(diploid) 3	44.692
	CNS0095595	Whole white alabastrum(diploid) 2	38.655
	CNS0095596	Whole white alabastrum(diploid) 3	33.954
	CNS0095597	Whole white alabastrum(diploid) 4	34.902
	CNS0095598	Silvery flower (diploied) 1	85.368
	CNS0095599	Silvery flower (diploied) 2	61.538
	CNS0095600	Silvery flower (diploied) 3	138.221
	CNS0095601	Golden flower (diploid) 1	79.336
	CNS0095602	Golden flower (diploid) 2	129.488
	CNS0095603	Golden flower (diploid) 3	128.082
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.263
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.833
	CNS0095606	Slightly white alabastrum(tetraploid) 3	82.956
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.521
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.202
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.789
	CNS0095610	Silvery flower (tetraploid) 1	153.972
	CNS0095611	Silvery flower (tetraploid) 2	139.984
	CNS0095612	Silvery flower (tetraploid) 3	121.374
	CNS0095613	Golden flower (tetraploid) 1	113.561
	CNS0095614	Golden flower (tetraploid) 2	144.948
	CNS0095615	Golden flower (tetraploid) 3	163.701
CRA001975	CRR073297	Stem 1	149.148
	CRR073298	Stem 2	152.878
	CRR073299	Stem 3	139.322
	CRR073300	Leaf 1	162.909
	CRR073301	Leaf 2	158.302
	CRR073302	Leaf 3	118.081
	CRR073303	Juvenile bud 1	163.405
	CRR073304	Juvenile bud 2	124.581
	CRR073305	Juvenile bud 3	218.020
	CRR073306	Third green 1	231.408
	CRR073307	Third green 2	156.528
	CRR073308	Third green 3	197.135
	CRR073309	Second white 1	144.984
	CRR073310	Second white 2	226.746
	CRR073311	Second white 3	206.632
	CRR073312	Silver flowering 1	178.091
	CRR073313	Silver flowering 2	149.917
	CRR073314	Silver flowering 3	167.184
	CRR073315	Gold flowering 1	131.101
	CRR073316	Gold flowering 2	171.085
	CRR073317	Gold flowering 3	96.355
	CRR073318	Tawny withering 1	170.459
	CRR073319	Tawny withering 2	130.598
	CRR073320	Tawny withering 3	127.060