Gene detail

Detail information of GWHGAAZE001640

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO65496.1	5.41491E-58	hypothetical protein CISIN_1g0221751mg [Citrus sinensis]
trEMBL	tr\|A0A067FPV3\|A0A067FPV3_CITSI	2E-58	Uncharacterized protein {ECO:0000313\|EMBL:KDO65497.1}
TAIR10	AT3G57000.1	1E-40	nucleolar essential protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	55449949	55453210	-
GWHAAZE00000001	mRNA	55449949	55453210	-
GWHAAZE00000001	exon	55449949	55450106	-
GWHAAZE00000001	exon	55450439	55450496	-
GWHAAZE00000001	exon	55450585	55450667	-
GWHAAZE00000001	exon	55450759	55450869	-
GWHAAZE00000001	exon	55451005	55451157	-
GWHAAZE00000001	exon	55453138	55453210	-
GWHAAZE00000001	CDS	55453138	55453210	-
GWHAAZE00000001	CDS	55451005	55451157	-
GWHAAZE00000001	CDS	55450759	55450869	-
GWHAAZE00000001	CDS	55450585	55450667	-
GWHAAZE00000001	CDS	55450439	55450496	-
GWHAAZE00000001	CDS	55449949	55450106	-

Transcript Sequence
>GWHTAAZE001644 ATGGGGTCTCTCTCTACCCAGTGGTTGGTGGTGGTTCCAGCAGGGCCGGGGAGGGGATGTGATAGAGGGTCTTCTGTTCAGGCTCTCCTCGAACTTACAGATAGCAATCTTTATAGAGAGGGTCGAATACAGGCAATTTATGTAAGAACCGACCAAGGAGTGCTTATTAAAATTGAACCCAACATTCGCTTACCAAGAACATTTGGGAGTTTCTGCAGTATGATGTTGCAGACACTACAAAAGCTCAGTATTAATGCCCAGGGTAAGCGTGGGAAGCTTCTGCGCTTGGTCAAGAACCCTGTAACTCAACATTTACCTGTCAATTCTCTTAAAATAGGGTTGTCCTTTAGTTCAGAAAAACTGGTTCACATGAAGGACTACGTTGGTGCCATCAGCAATGACGTCAACTTGGTTTTTGTGGTTGGTGCAATGGCTCACGGAAAGATTGACTGCGAATATGTGGATGACTTTATATCAGCCTACTGCCGCCCTTGGAATTCGCTGCCATTCACTTCACTTTACTTGTGTTGGGAAGGAGACGGCTTGAAATGCAAGGGATGTGCCATTGTCATGAAGATGGTGATGTTACCAGCCATCACATTCACTAATCGAGAAGTTTTGGCCGTTCTGCCAATA

Network for GWHGAAZE001640

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03587.15	EMG1	27	162	1.50E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14568	EMG1, NEP1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.219
	SRR3591706	second leaf	1.452
	SRR3591707	mature leaf	2.325
	SRR3591708	Shoot apex	4.706
	SRR3591709	Stem	3.930
	SRR3591710	White floral bud	3.220
	SRR3591711	White flower	4.939
	SRR3591712	Green floral bud	5.673
	SRR3591713	Yellow flower	4.513
SRP173429	SRR8316895	Juvenile bud stage	4.892
	SRR8316896	Juvenile bud stage	5.197
	SRR8316897	Juvenile bud stage	3.575
	SRR8316894	Third green stage	1.126
	SRR8316900	Third green stage	5.740
	SRR8316901	Third green stage	4.956
	SRR8316898	Complete white stage	2.282
	SRR8316899	Complete white stage	5.666
	SRR8316903	Complete white stage	2.592
	SRR8316902	Silver flowering stage	2.269
	SRR8316904	Silver flowering stage	2.144
	SRR8316905	Silver flowering stage	0.863
	SRR8316906	Gold flowering stage	3.426
	SRR8316907	Gold flowering stage	2.909
	SRR8316908	Gold flowering stage	4.180
SRP132670	SRR6706286	Control	2.484
	SRR6706287	Light intensity 50%	2.645
	SRR6706288	Light intensity 20%	3.312
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.357
	CNS0095593	Slightly white alabastrum(diploid) 2	4.567
	CNS0095594	Slightly white alabastrum(diploid) 3	7.612
	CNS0095595	Whole white alabastrum(diploid) 2	4.878
	CNS0095596	Whole white alabastrum(diploid) 3	6.173
	CNS0095597	Whole white alabastrum(diploid) 4	3.568
	CNS0095598	Silvery flower (diploied) 1	5.385
	CNS0095599	Silvery flower (diploied) 2	5.619
	CNS0095600	Silvery flower (diploied) 3	5.483
	CNS0095601	Golden flower (diploid) 1	3.505
	CNS0095602	Golden flower (diploid) 2	5.472
	CNS0095603	Golden flower (diploid) 3	3.346
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.615
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.484
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.595
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.355
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.148
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.439
	CNS0095610	Silvery flower (tetraploid) 1	4.641
	CNS0095611	Silvery flower (tetraploid) 2	5.808
	CNS0095612	Silvery flower (tetraploid) 3	6.308
	CNS0095613	Golden flower (tetraploid) 1	4.068
	CNS0095614	Golden flower (tetraploid) 2	5.555
	CNS0095615	Golden flower (tetraploid) 3	4.120
CRA001975	CRR073297	Stem 1	2.488
	CRR073298	Stem 2	3.089
	CRR073299	Stem 3	3.453
	CRR073300	Leaf 1	2.533
	CRR073301	Leaf 2	2.773
	CRR073302	Leaf 3	1.944
	CRR073303	Juvenile bud 1	1.941
	CRR073304	Juvenile bud 2	1.799
	CRR073305	Juvenile bud 3	2.220
	CRR073306	Third green 1	0.887
	CRR073307	Third green 2	1.365
	CRR073308	Third green 3	1.635
	CRR073309	Second white 1	1.552
	CRR073310	Second white 2	3.909
	CRR073311	Second white 3	0.717
	CRR073312	Silver flowering 1	0.967
	CRR073313	Silver flowering 2	1.090
	CRR073314	Silver flowering 3	0.731
	CRR073315	Gold flowering 1	1.433
	CRR073316	Gold flowering 2	2.250
	CRR073317	Gold flowering 3	1.038
	CRR073318	Tawny withering 1	4.410
	CRR073319	Tawny withering 2	7.447
	CRR073320	Tawny withering 3	5.772