Gene detail

Detail information of GWHGAAZE001653

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU45302.1	2.14641E-61	hypothetical protein MIMGU_mgv1a012383mg [Erythranthe guttata]
Swissprot	tr\|Q6Z9C3\|6PGL3_ORYSJ	2E-51	Probable 6-phosphogluconolactonase 3, chloroplastic (Precursor)
trEMBL	tr\|A0A022RXR9\|A0A022RXR9_ERYGU	8E-62	Uncharacterized protein {ECO:0000313\|EMBL:EYU45302.1}
TAIR10	AT5G24400.1	1E-39	NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	56573206	56575737	-
GWHAAZE00000001	mRNA	56573206	56575737	-
GWHAAZE00000001	exon	56575602	56575737	-
GWHAAZE00000001	exon	56573206	56573687	-
GWHAAZE00000001	CDS	56575602	56575737	-
GWHAAZE00000001	CDS	56573206	56573687	-

Transcript Sequence
>GWHTAAZE001657 ATGGCAAGGGTGTGCAAGAAGATTCTCGAGTTCGATTCCGAAGAAGATGTGGCTGTGGATCTGTCAGCAAAAATTTCCAAACTCTCAGCTAAATATATCAAAGAAAGAGGTTATTTCACTGTTGTTCTCTCTGGAGGAATTCCAAAGTCAAATATTTATTGCATAAAGGAAAAAGTTACACCGGAAGAAGCAGCGGATGATTATGAGGCCTGTCTAAAGCAATTGGTGGCCAACAAGACATTACCACTTTCACCAAATGGTTTCCCAATTTTTGACTTGATGCTGCTAGGAATGGGGCCAGAGGGACATGTAGCTTCGCTCTTCTGTTGGCATTTTCAGCGCTACGAGACCCAGAGGTGGATTACCTTCATAAAGGCCTCGCCTAAACCACCCGCGGAGAGGATCACAATGACATTTCCAGTAATAAACGCGTCTAAGCATATAGCAATGGTGGTGACAGGAAAGGAGGTAGCGGACGCGGTCAAAGTGGCACTGCATGAGAGTGATCAAGGTTATGCTTATATTCCGTTGCCTGTTCAAATGGTTTCACCTACTAATGGGGAGCTCACTTGGTATCTTGATAAAGATGCTCTTTCCAAGATGCGGGGAAGACCTTAA

Network for GWHGAAZE001653

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01182.21	Glucosamine_iso	47	191	8.50E-37
PF04051.17	TRAPP	4	160	1.20E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01057	PGLS, pgl, devB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pentose phosphate pathway	map00030

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006098	biological_process	pentose-phosphate shunt
GO:0043087	biological_process	regulation of GTPase activity
GO:0048193	biological_process	Golgi vesicle transport
GO:0017057	molecular_function	6-phosphogluconolactonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.640
	SRR3591706	second leaf	29.245
	SRR3591707	mature leaf	48.372
	SRR3591708	Shoot apex	113.517
	SRR3591709	Stem	6.655
	SRR3591710	White floral bud	68.721
	SRR3591711	White flower	86.468
	SRR3591712	Green floral bud	236.350
	SRR3591713	Yellow flower	89.613
SRP173429	SRR8316895	Juvenile bud stage	207.767
	SRR8316896	Juvenile bud stage	179.639
	SRR8316897	Juvenile bud stage	20.242
	SRR8316894	Third green stage	45.806
	SRR8316900	Third green stage	143.468
	SRR8316901	Third green stage	153.535
	SRR8316898	Complete white stage	24.519
	SRR8316899	Complete white stage	86.489
	SRR8316903	Complete white stage	31.354
	SRR8316902	Silver flowering stage	31.300
	SRR8316904	Silver flowering stage	24.742
	SRR8316905	Silver flowering stage	18.229
	SRR8316906	Gold flowering stage	73.915
	SRR8316907	Gold flowering stage	84.602
	SRR8316908	Gold flowering stage	31.576
SRP132670	SRR6706286	Control	126.649
	SRR6706287	Light intensity 50%	120.629
	SRR6706288	Light intensity 20%	142.549
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	67.494
	CNS0095593	Slightly white alabastrum(diploid) 2	42.234
	CNS0095594	Slightly white alabastrum(diploid) 3	98.131
	CNS0095595	Whole white alabastrum(diploid) 2	40.200
	CNS0095596	Whole white alabastrum(diploid) 3	42.704
	CNS0095597	Whole white alabastrum(diploid) 4	29.209
	CNS0095598	Silvery flower (diploied) 1	21.277
	CNS0095599	Silvery flower (diploied) 2	14.686
	CNS0095600	Silvery flower (diploied) 3	78.725
	CNS0095601	Golden flower (diploid) 1	24.943
	CNS0095602	Golden flower (diploid) 2	68.109
	CNS0095603	Golden flower (diploid) 3	64.809
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.647
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.862
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.579
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.029
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.133
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.492
	CNS0095610	Silvery flower (tetraploid) 1	29.028
	CNS0095611	Silvery flower (tetraploid) 2	33.319
	CNS0095612	Silvery flower (tetraploid) 3	20.752
	CNS0095613	Golden flower (tetraploid) 1	59.804
	CNS0095614	Golden flower (tetraploid) 2	51.179
	CNS0095615	Golden flower (tetraploid) 3	5.289
CRA001975	CRR073297	Stem 1	188.776
	CRR073298	Stem 2	147.310
	CRR073299	Stem 3	297.532
	CRR073300	Leaf 1	76.813
	CRR073301	Leaf 2	81.378
	CRR073302	Leaf 3	107.839
	CRR073303	Juvenile bud 1	79.201
	CRR073304	Juvenile bud 2	87.945
	CRR073305	Juvenile bud 3	67.481
	CRR073306	Third green 1	47.107
	CRR073307	Third green 2	19.968
	CRR073308	Third green 3	26.484
	CRR073309	Second white 1	43.918
	CRR073310	Second white 2	22.929
	CRR073311	Second white 3	59.200
	CRR073312	Silver flowering 1	38.578
	CRR073313	Silver flowering 2	26.229
	CRR073314	Silver flowering 3	31.483
	CRR073315	Gold flowering 1	14.207
	CRR073316	Gold flowering 2	21.992
	CRR073317	Gold flowering 3	15.887
	CRR073318	Tawny withering 1	6.205
	CRR073319	Tawny withering 2	15.896
	CRR073320	Tawny withering 3	5.978