Gene detail

Detail information of GWHGAAZE001666

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006356504.1	0	PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberosum]
Swissprot	tr\|Q0WP01\|PTR9_ARATH	0	Protein NRT1/ PTR FAMILY 5.10
trEMBL	tr\|M1D3I7\|M1D3I7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400080452}
TAIR10	AT1G22540.1	5E-178	Major facilitator superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	57235128	57239644	-
GWHAAZE00000001	mRNA	57235128	57239644	-
GWHAAZE00000001	exon	57235128	57235926	-
GWHAAZE00000001	exon	57236598	57237157	-
GWHAAZE00000001	exon	57238617	57238834	-
GWHAAZE00000001	exon	57239485	57239644	-
GWHAAZE00000001	CDS	57239485	57239644	-
GWHAAZE00000001	CDS	57238617	57238834	-
GWHAAZE00000001	CDS	57236598	57237157	-
GWHAAZE00000001	CDS	57235128	57235926	-

Transcript Sequence
>GWHTAAZE001670 ATGGTCACTGTCGTTGAGTATACACCCATCACCACCCTCACCGGCGCCAATACTTCCACTCCCCTCCTCGACGACGTGGTTGACGGCGTTGTCAACTTCCAAGGTAACCCGGTACACAGATCAAAATCCGGCGGATGGAGGTCCGCATCATTCATCATAGGCGTTGAAGTGGCCGAGAGGTTTGCTTATTATGGGATAAGCTTAAATCTCATAACATACTTGACCGGACCACTGGGACAATCCACGGCTACAGCTGCCGCGAACGTGAATGCTTGGTATGGAACGGCTTCGCTTCTGCCGCTTTTGGGTGCTTTTATTGCTGACTCGTTTTTGGGTCGGTTCCGCGCAATCTTCATTTCTTCACTGCTTTATATTCTGGGTCTGGGATTGTTGACACTTTCAGCAGTAATTCCTACTTCCGAACGCGAAAAGTGTGCCAATGCCACATCATCGTCGTCATCATCATCATCATCATCATCATGTTCACCTCCCCAATATCAAGTTATCTTATTCTTCTTCTCACTGTATCTAGTTGCATTTGCACAAGGCGGGCACAAGCCTTGCGTCCAGGCTTTCGGAGCTGACCAGTTTGATTCAAGTGATCCAGAGGAGTGCAAAGCCAAAAGCTCCTTCTTTAACTGGTGGTTCTTTGGTGTTTGTGCAGGTGCAGGGGTAACCCTCTTGATTTTGCCCTATATTCAAGATAACCTTAGTTGGGTTCTTGGCTTTGGTATACCCTTCATCGTTATGAGCTTCGCCCTTGTCTCGTTCTTGCTTGGAACTACGACTTACCGGTTTCCCGTCAATGGTGATGATAAAAGCCCATTCGTTAGAATCGGTCAGGTTTTTGTTAAAGCTGCTAGGAATTGGAGAACTACCCCTTCAGCAATATCCCTTGAAGAGGAATATTTGCTTCACCATGGTTCTCAGCAATTTAAGTTTCTCAACAAAGCCTTGCTTTCACTCAACGGTTCAAACGGCAATGTTTGTAGCTTAAGTGAAGTGGAAGACGCAAAGGCGCTGCTGAAGCTGGTTCCAATATGGGCTACATCTCTAGCCTATACAATTGTATTTGCACAATCCTCCACTCTCTTCACTAAGCAAGGGGTCACCATGGACCGTTCTCTCGGATCAACGTTTAAAATACCGTCCGCTTCCCTCCAAGCCTTCACAAGCCTAACCATTGTTATCCTAGTGCCCATTTACGACTGTGTTTTCGTCCCTGTAACACGAGCCATAACCCGTAAACCCTCGGGCATAACAATGCTCCAAAGGATCGGAATTGGGATGGCCTTATCCATACTCTCTATGCTCGTTGCGGCCCTAACTGAGATGAAACGGCTCGAGACTGCTCGAGCAAGTGGGTTGGTAGACGAGCCGGAGGCGACAGTGCCTATGAGCTTTTGGTGGTTGGTGCCTCAATACATGTTGTTCGGTGTGAGTGACGTGTTCACATTGGTTGGGTTGCAAGAGTTTTTCTATGATCAAGTCCCAAGGGAATTGAGGAGTTTAGGCTTAGCTCTCTATCTTAGCATTTTGGGCATTGGGAGCTTCCTTAGCAGCATTCTCATATCAATTATAGATAATACCACAGGTGCGGATGGTCAAGACGGATGGTTTTCAGATAATTTGAATAAAGCTCACCTCGATTACTTCTATTGGCTGCTCGCTGGGATCAGCACGGTGGCATTGGCGGCATACTTATTCTTCGCCAAATCTTACATTTACAGTCGATGA

Network for GWHGAAZE001666

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00854.22	PTR2	114	539	7.50E-99
PF00046.30	Homeodomain	147	200	4.10E-15
PF02183.19	HALZ	202	242	1.90E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0055085	biological_process	transmembrane transport
GO:0006857	biological_process	oligopeptide transport
GO:0016020	cellular_component	membrane
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0003677	molecular_function	DNA binding
GO:0022857	molecular_function	transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.206
	SRR3591706	second leaf	22.115
	SRR3591707	mature leaf	15.946
	SRR3591708	Shoot apex	13.708
	SRR3591709	Stem	6.891
	SRR3591710	White floral bud	1.318
	SRR3591711	White flower	0.790
	SRR3591712	Green floral bud	2.238
	SRR3591713	Yellow flower	0.092
SRP173429	SRR8316895	Juvenile bud stage	4.833
	SRR8316896	Juvenile bud stage	4.420
	SRR8316897	Juvenile bud stage	2.543
	SRR8316894	Third green stage	2.341
	SRR8316900	Third green stage	9.404
	SRR8316901	Third green stage	7.397
	SRR8316898	Complete white stage	1.354
	SRR8316899	Complete white stage	20.650
	SRR8316903	Complete white stage	2.886
	SRR8316902	Silver flowering stage	0.146
	SRR8316904	Silver flowering stage	0.158
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.292
	SRR8316907	Gold flowering stage	0.483
	SRR8316908	Gold flowering stage	0.244
SRP132670	SRR6706286	Control	12.287
	SRR6706287	Light intensity 50%	10.348
	SRR6706288	Light intensity 20%	10.745
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.662
	CNS0095593	Slightly white alabastrum(diploid) 2	4.894
	CNS0095594	Slightly white alabastrum(diploid) 3	3.990
	CNS0095595	Whole white alabastrum(diploid) 2	3.064
	CNS0095596	Whole white alabastrum(diploid) 3	3.503
	CNS0095597	Whole white alabastrum(diploid) 4	3.319
	CNS0095598	Silvery flower (diploied) 1	7.781
	CNS0095599	Silvery flower (diploied) 2	5.504
	CNS0095600	Silvery flower (diploied) 3	2.151
	CNS0095601	Golden flower (diploid) 1	5.733
	CNS0095602	Golden flower (diploid) 2	2.470
	CNS0095603	Golden flower (diploid) 3	2.729
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.987
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.820
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.328
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.881
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.567
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.532
	CNS0095610	Silvery flower (tetraploid) 1	0.248
	CNS0095611	Silvery flower (tetraploid) 2	0.395
	CNS0095612	Silvery flower (tetraploid) 3	0.195
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.059
	CNS0095615	Golden flower (tetraploid) 3	0.194
CRA001975	CRR073297	Stem 1	11.201
	CRR073298	Stem 2	11.218
	CRR073299	Stem 3	16.850
	CRR073300	Leaf 1	15.280
	CRR073301	Leaf 2	14.246
	CRR073302	Leaf 3	13.575
	CRR073303	Juvenile bud 1	21.662
	CRR073304	Juvenile bud 2	13.787
	CRR073305	Juvenile bud 3	33.599
	CRR073306	Third green 1	1.321
	CRR073307	Third green 2	1.115
	CRR073308	Third green 3	1.804
	CRR073309	Second white 1	0.120
	CRR073310	Second white 2	0.083
	CRR073311	Second white 3	0.030
	CRR073312	Silver flowering 1	0.313
	CRR073313	Silver flowering 2	0.040
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	15.701
	CRR073316	Gold flowering 2	19.161
	CRR073317	Gold flowering 3	33.824
	CRR073318	Tawny withering 1	2.444
	CRR073319	Tawny withering 2	1.058
	CRR073320	Tawny withering 3	2.206