Gene detail

Detail information of GWHGAAZE001670

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011077093.1	PREDICTED: beta-hexosaminidase 3 [Sesamum indicum]
Swissprot	tr\|Q8L7S6\|HEXO3_ARATH	Beta-hexosaminidase 3 (Precursor)
trEMBL	tr\|A0A022RKV0\|A0A022RKV0_ERYGU	Beta-hexosaminidase {ECO:0000256\|PIRNR:PIRNR001093}
TAIR10	AT1G65590.1	beta-hexosaminidase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	57364249	57373557	+
GWHAAZE00000001	mRNA	57364249	57373557	+
GWHAAZE00000001	exon	57364249	57364578	+
GWHAAZE00000001	exon	57365736	57365810	+
GWHAAZE00000001	exon	57366387	57366422	+
GWHAAZE00000001	exon	57366520	57366631	+
GWHAAZE00000001	exon	57366918	57366988	+
GWHAAZE00000001	exon	57367607	57367674	+
GWHAAZE00000001	exon	57367851	57367916	+
GWHAAZE00000001	exon	57368472	57368572	+
GWHAAZE00000001	exon	57368666	57368725	+
GWHAAZE00000001	exon	57369314	57369347	+
GWHAAZE00000001	exon	57370080	57370178	+
GWHAAZE00000001	exon	57370259	57370318	+
GWHAAZE00000001	exon	57371111	57371361	+
GWHAAZE00000001	exon	57373391	57373557	+
GWHAAZE00000001	CDS	57364249	57364578	+
GWHAAZE00000001	CDS	57365736	57365810	+
GWHAAZE00000001	CDS	57366387	57366422	+
GWHAAZE00000001	CDS	57366520	57366631	+
GWHAAZE00000001	CDS	57366918	57366988	+
GWHAAZE00000001	CDS	57367607	57367674	+
GWHAAZE00000001	CDS	57367851	57367916	+
GWHAAZE00000001	CDS	57368472	57368572	+
GWHAAZE00000001	CDS	57368666	57368725	+
GWHAAZE00000001	CDS	57369314	57369347	+
GWHAAZE00000001	CDS	57370080	57370178	+
GWHAAZE00000001	CDS	57370259	57370318	+
GWHAAZE00000001	CDS	57371111	57371361	+
GWHAAZE00000001	CDS	57373391	57373557	+

Transcript Sequence
>GWHTAAZE001674 ATGTTGCAGAAGAATATTTTGATTGTGCTTGTGTTTCAAGTGATTGTTATTATTGGGGTTGTAAATGGTGCCGATACAAAGCAGTTAAACATATGGCCGATGCCTGAATCAGTGGTCTATGGGCAAGGAAGTCTTTTTCTAAGTAGTGACTTTAAGCTTACAACAGAAGGAAGCAAATATGCTGATGCTTCTGGGATTCTCAAGGATGGGTTTTCAAGGTTAATTGATATGGTCAAATCAGGCCATGTTGTTGAATCTAACATTTCCAAATTTCGCTCTTCTGTATTGCTACACGGAATTCACGTGGTTGTCTTTTCGCCAAACAACGAGTTACAATATGGAATTGATGAATCTTACAACTTATCTATCCCCGTAAATGGAGAGCCAATTTATGCGCATCTTGAGGCACAAACGGTTTATGGTGCTTTGCATGGGTTGCAGACATTCAGCCAAGTGTGTTTTTTCGACTTTAATAGTAGAGCAATTGAAGTTCGCCAGGTCCCGTTAAGCATTACCGATAAGCCCAGGTTCTCTTACCGAGGCCTATTAATTGATACATCTCGACATTATCAGCCGTTGCCAGTGATAAAGAAGGTTATTGATTCTATGGCTTATGCAAAGCTGAATGTGCTTCACTGGCATATTGTAGATTCACAATCTTTCCCTCTGGAAATACCTTCTTTTCCAAAAATTTATGCTCAAAGACGAGGGATTAGTGTGTTATCTGAGATTGATGTTCCAGGACATGCTCTCTCCTGGGGAACTGGTTATCATTCCCTATGGCCTTCAACAGATTGTAAAGAACCACTTGATGTCAGCAATGAATTCACCTTTAAAGTAATAGATGGAATTCTTTCAGACTTCAGTAAGATTTTCAAATACAAATTCGTTCACTTGGGGGGTGATGAAGTTGATACCGGTTGCTGGGCAACAACTCCCCACGTAAAGAACTGGTTAAAGAAGCAAGGTTTGAACCAAACTGAAGCTTACCAATACTTTGTCTTGCGAGCGCAAAAAATAGCTATGTCCCATGGATATGAAGTTGTTAACTGGGAGGAGACCTTCAACAACTTTGGCAGTAAATTGAGCCGAAAAACTGTGGTACATAACTGGCTTGGGGGAGGTGTAGCAGAGTCAGTGACAGCAGCTGGATTGAGGTGCATTGTAAGTAACCAGGATAAGTGGTATTTGGACCACTTGGATACCACTTGGCAAGAGTTCTACATGAATGAACCCCTCACTAACATAACCAACCCAAAGCAACAAAAGTTGGTCATCGGAGGCGAAGTATGCATGTGGGGCGAACACATCGACGGCTCTGATATTGAACAAACCATATGGCCCCGTGCTGCCGCAGCTGCAGAGAGGTTGTGGACAGCTTATGACAAATTAGCAAAGAATCCAAAGGAAGTAACATCAAGGTTAGCCCACTTTAGGTGCTTGCTTAATCAAAGAGGAGTTGCCGCGGCTCCTTTGGCCGGACCTGGTCGAGTTGCCCCTGAACAGCCCGGATCTTGCTTTGCGCAGTAA

Network for GWHGAAZE001670

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14845.7	Glycohydro_20b2	31	151	5.60E-15
PF00728.23	Glyco_hydro_20	177	230	1.50E-22
PF00728.23	Glyco_hydro_20	232	460	2.80E-48
PF16113.6	ECH_2	2	295	1.40E-86

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Metabolic pathways	map01100
		Carbon metabolism	map01200
		Amino sugar and nucleotide sugar metabolism	map00520
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410
		Various types of N-glycan biosynthesis	map00513
		Glycosaminoglycan degradation	map00531
		Glycosphingolipid biosynthesis - globo and isoglobo series	map00603
		Glycosphingolipid biosynthesis - ganglio series	map00604
		Other glycan degradation	map00511
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004563	molecular_function	beta-N-acetylhexosaminidase activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	69.326
	SRR3591706	second leaf	44.048
	SRR3591707	mature leaf	20.018
	SRR3591708	Shoot apex	49.872
	SRR3591709	Stem	30.536
	SRR3591710	White floral bud	30.694
	SRR3591711	White flower	20.006
	SRR3591712	Green floral bud	38.285
	SRR3591713	Yellow flower	10.840
SRP173429	SRR8316895	Juvenile bud stage	25.816
	SRR8316896	Juvenile bud stage	35.026
	SRR8316897	Juvenile bud stage	15.520
	SRR8316894	Third green stage	15.237
	SRR8316900	Third green stage	39.310
	SRR8316901	Third green stage	41.077
	SRR8316898	Complete white stage	18.545
	SRR8316899	Complete white stage	41.034
	SRR8316903	Complete white stage	27.182
	SRR8316902	Silver flowering stage	6.505
	SRR8316904	Silver flowering stage	10.506
	SRR8316905	Silver flowering stage	4.203
	SRR8316906	Gold flowering stage	7.930
	SRR8316907	Gold flowering stage	12.828
	SRR8316908	Gold flowering stage	9.714
SRP132670	SRR6706286	Control	25.485
	SRR6706287	Light intensity 50%	24.583
	SRR6706288	Light intensity 20%	27.319
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.967
	CNS0095593	Slightly white alabastrum(diploid) 2	23.812
	CNS0095594	Slightly white alabastrum(diploid) 3	15.370
	CNS0095595	Whole white alabastrum(diploid) 2	16.169
	CNS0095596	Whole white alabastrum(diploid) 3	19.880
	CNS0095597	Whole white alabastrum(diploid) 4	15.177
	CNS0095598	Silvery flower (diploied) 1	26.715
	CNS0095599	Silvery flower (diploied) 2	30.233
	CNS0095600	Silvery flower (diploied) 3	21.280
	CNS0095601	Golden flower (diploid) 1	25.649
	CNS0095602	Golden flower (diploid) 2	22.389
	CNS0095603	Golden flower (diploid) 3	19.342
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.186
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.890
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.092
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.247
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.666
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.527
	CNS0095610	Silvery flower (tetraploid) 1	16.607
	CNS0095611	Silvery flower (tetraploid) 2	17.248
	CNS0095612	Silvery flower (tetraploid) 3	12.347
	CNS0095613	Golden flower (tetraploid) 1	4.875
	CNS0095614	Golden flower (tetraploid) 2	11.742
	CNS0095615	Golden flower (tetraploid) 3	7.260
CRA001975	CRR073297	Stem 1	43.483
	CRR073298	Stem 2	44.156
	CRR073299	Stem 3	40.716
	CRR073300	Leaf 1	37.519
	CRR073301	Leaf 2	38.653
	CRR073302	Leaf 3	31.003
	CRR073303	Juvenile bud 1	28.743
	CRR073304	Juvenile bud 2	32.178
	CRR073305	Juvenile bud 3	29.925
	CRR073306	Third green 1	11.171
	CRR073307	Third green 2	10.447
	CRR073308	Third green 3	10.147
	CRR073309	Second white 1	6.224
	CRR073310	Second white 2	3.245
	CRR073311	Second white 3	5.146
	CRR073312	Silver flowering 1	2.050
	CRR073313	Silver flowering 2	2.241
	CRR073314	Silver flowering 3	2.170
	CRR073315	Gold flowering 1	17.792
	CRR073316	Gold flowering 2	29.167
	CRR073317	Gold flowering 3	20.035
	CRR073318	Tawny withering 1	21.646
	CRR073319	Tawny withering 2	20.032
	CRR073320	Tawny withering 3	27.147