Detail information of GWHGAAZE001672


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008350672.11.7128E-160PREDICTED: isopentenyl-diphosphate Delta-isomerase I-like [Malus domestica]
Swissprottr|O48965|IDI2_CAMAC3E-160Isopentenyl-diphosphate Delta-isomerase II
trEMBLtr|G4XGW8|G4XGW8_VITVI9E-161Isopentenyl diphosphate isomerase II(IPI2) {ECO:0000313|EMBL:AEP17009.1}
TAIR10AT5G16440.11E-122isopentenyl diphosphate isomerase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5741791957423649-
GWHAAZE00000001mRNA5741791957423649-
GWHAAZE00000001exon5741791957418172-
GWHAAZE00000001exon5741849957418636-
GWHAAZE00000001exon5741986057419962-
GWHAAZE00000001exon5742098157421072-
GWHAAZE00000001exon5742182857421883-
GWHAAZE00000001exon5742359157423649-
GWHAAZE00000001CDS5742359157423649-
GWHAAZE00000001CDS5742182857421883-
GWHAAZE00000001CDS5742098157421072-
GWHAAZE00000001CDS5741986057419962-
GWHAAZE00000001CDS5741849957418636-
GWHAAZE00000001CDS5741791957418172-
Transcript Sequence

Network for GWHGAAZE001672

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00293.29NUDIX511891.10E-22
PF03109.17ABC13003984.00E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01823idi, IDI Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0008299biological_processisoprenoid biosynthetic process
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0004452molecular_functionisopentenyl-diphosphate delta-isomerase activity
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf80.508
SRR3591706second leaf103.922
SRR3591707mature leaf17.619
SRR3591708Shoot apex147.033
SRR3591709Stem42.870
SRR3591710White floral bud207.399
SRR3591711White flower234.602
SRR3591712Green floral bud178.507
SRR3591713Yellow flower482.376
SRP173429 SRR8316895Juvenile bud stage 118.025
SRR8316896Juvenile bud stage 168.468
SRR8316897Juvenile bud stage 78.141
SRR8316894Third green stage 62.270
SRR8316900Third green stage 185.303
SRR8316901Third green stage 180.136
SRR8316898Complete white stage 168.797
SRR8316899Complete white stage 106.099
SRR8316903Complete white stage 292.015
SRR8316902Silver flowering stage299.790
SRR8316904Silver flowering stage352.750
SRR8316905Silver flowering stage182.388
SRR8316906Gold flowering stage 584.487
SRR8316907Gold flowering stage 549.870
SRR8316908Gold flowering stage 611.648
SRP132670SRR6706286Control151.142
SRR6706287Light intensity 50%166.132
SRR6706288Light intensity 20%168.469
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1126.744
CNS0095593Slightly white alabastrum(diploid) 2114.250
CNS0095594Slightly white alabastrum(diploid) 3146.080
CNS0095595Whole white alabastrum(diploid) 2105.850
CNS0095596Whole white alabastrum(diploid) 3121.754
CNS0095597Whole white alabastrum(diploid) 490.627
CNS0095598Silvery flower (diploied) 178.412
CNS0095599Silvery flower (diploied) 287.968
CNS0095600Silvery flower (diploied) 3226.244
CNS0095601Golden flower (diploid) 1152.897
CNS0095602Golden flower (diploid) 2264.980
CNS0095603Golden flower (diploid) 3261.046
CNS0095604Slightly white alabastrum(tetraploid) 1166.885
CNS0095605Slightly white alabastrum(tetraploid) 2163.881
CNS0095606Slightly white alabastrum(tetraploid) 3168.226
CNS0095607Whole white alabastrum(tetraploid) 1123.630
CNS0095608Whole white alabastrum(tetraploid) 2117.341
CNS0095609Whole white alabastrum(tetraploid) 3171.075
CNS0095610Silvery flower (tetraploid) 1155.369
CNS0095611Silvery flower (tetraploid) 2135.530
CNS0095612Silvery flower (tetraploid) 3309.931
CNS0095613Golden flower (tetraploid) 1421.696
CNS0095614Golden flower (tetraploid) 2286.080
CNS0095615Golden flower (tetraploid) 3526.699
CRA001975CRR073297Stem 1150.436
CRR073298Stem 2133.582
CRR073299Stem 3153.151
CRR073300Leaf 1150.573
CRR073301Leaf 2149.090
CRR073302Leaf 3190.842
CRR073303Juvenile bud 1147.078
CRR073304Juvenile bud 2207.702
CRR073305Juvenile bud 3104.645
CRR073306Third green 1875.535
CRR073307Third green 2676.839
CRR073308Third green 3708.001
CRR073309Second white 1932.974
CRR073310Second white 2610.375
CRR073311Second white 3621.114
CRR073312Silver flowering 11038.581
CRR073313Silver flowering 21259.896
CRR073314Silver flowering 3952.827
CRR073315Gold flowering 122.082
CRR073316Gold flowering 225.698
CRR073317Gold flowering 320.415
CRR073318Tawny withering 1122.474
CRR073319Tawny withering 2113.731
CRR073320Tawny withering 377.409