Gene detail

Detail information of GWHGAAZE001682

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU30756.1	9.21118E-46	hypothetical protein MIMGU_mgv1a018041mg [Erythranthe guttata]
Swissprot	tr\|Q9LIR8\|FBK67_ARATH	2E-12	F-box/kelch-repeat protein At3g23880
trEMBL	tr\|A0A022QS53\|A0A022QS53_ERYGU	3E-46	Uncharacterized protein {ECO:0000313\|EMBL:EYU30756.1}
TAIR10	AT3G06240.1	3E-15	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	57720175	57721255	-
GWHAAZE00000001	mRNA	57720175	57721255	-
GWHAAZE00000001	exon	57720556	57721255	-
GWHAAZE00000001	exon	57720175	57720401	-
GWHAAZE00000001	CDS	57720556	57721255	-
GWHAAZE00000001	CDS	57720175	57720401	-

Transcript Sequence
>GWHTAAZE001686 ATGTCTGACTATATTCCTACTGAAATCATAGTTAATATCCTGTCATGCCTGCCTCCAAGGTCTCTTCTTCGATTCAGGTGCGTTTGTAAATCATGGTGTTCTCTAATTTCAAGCCCTAATTTCATCGACCTTCACACTCACCAACTCGATGATTCTTCGAATCACAACACTCGCATACTTGCCCTGCGCTTGACTGGCCGTGTAAGTTACGGTAGCAAAGTCTATCCTCTCGATTTCAATAGCGAAATGTTACGCGTAGACGACGAGAGTGTCGGAATTGATTGTCCATTTGCCATTCCAGCACAGTGGTGCAGCACTTCTTGTAATGGCTTGTTTCTTGTTTGTTGTTCCGTCTTTCAAGGTCTATGGAATCCTTCCATTAGAAGAAAACTGGTTCTCGGCGAGTCCCTATTCGGGGTCGTGTCAAAACGTAGGTATGTTAGTGCGTTGGGGTTTAATCCAAAAACTAATGATTACAAGATTGTCAATATTGGATATGAACGAATGCGCGGTGGATCCCATTGTAATGAAGTTAGGGTTTATTCAGTTAAGGAGGGGGCTTGGAGGCGCATTAGTGCCCCTGCTCCTCCCTATGATATTGTCTGCAGCATGCCTTTGAATGTTGTTATTAATGGATCTGTGTACTGGATTGCTAACCACAGTGTCTCGGGGACTTCTGACTTTCGGGCGATTGGTCCACTCATTCAATATGAAGAATTTCTCAACCTTCGTTCCATTTGGGTGATGAAAAAAGATGGTGAGGTAGAGTCGTGGAGTGAAAAATATAGTTTTGATCCTGACTTGGGTTTTGGGAGGATGTTGGGTTTTAGGGAGAATGGTGAACTGGTATTGTTGAATAAAGATGATGATCTGATAGCTTATAACCCAATTACCCGACAAAGCACAAACCTTACGGCTGGGCCATAA

Network for GWHGAAZE001682

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	41	4.30E-10
PF01694.23	Rhomboid	53	206	9.80E-26

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0004252	molecular_function	serine-type endopeptidase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.580
	SRR3591706	second leaf	13.458
	SRR3591707	mature leaf	18.179
	SRR3591708	Shoot apex	9.376
	SRR3591709	Stem	9.494
	SRR3591710	White floral bud	4.726
	SRR3591711	White flower	5.931
	SRR3591712	Green floral bud	5.766
	SRR3591713	Yellow flower	2.895
SRP173429	SRR8316895	Juvenile bud stage	3.127
	SRR8316896	Juvenile bud stage	3.414
	SRR8316897	Juvenile bud stage	1.508
	SRR8316894	Third green stage	1.658
	SRR8316900	Third green stage	3.978
	SRR8316901	Third green stage	3.428
	SRR8316898	Complete white stage	1.977
	SRR8316899	Complete white stage	6.364
	SRR8316903	Complete white stage	2.862
	SRR8316902	Silver flowering stage	1.381
	SRR8316904	Silver flowering stage	4.331
	SRR8316905	Silver flowering stage	1.674
	SRR8316906	Gold flowering stage	2.797
	SRR8316907	Gold flowering stage	1.849
	SRR8316908	Gold flowering stage	3.409
SRP132670	SRR6706286	Control	2.977
	SRR6706287	Light intensity 50%	4.171
	SRR6706288	Light intensity 20%	3.125
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.536
	CNS0095593	Slightly white alabastrum(diploid) 2	1.330
	CNS0095594	Slightly white alabastrum(diploid) 3	0.735
	CNS0095595	Whole white alabastrum(diploid) 2	1.013
	CNS0095596	Whole white alabastrum(diploid) 3	1.431
	CNS0095597	Whole white alabastrum(diploid) 4	0.512
	CNS0095598	Silvery flower (diploied) 1	3.315
	CNS0095599	Silvery flower (diploied) 2	1.066
	CNS0095600	Silvery flower (diploied) 3	5.349
	CNS0095601	Golden flower (diploid) 1	2.323
	CNS0095602	Golden flower (diploid) 2	5.578
	CNS0095603	Golden flower (diploid) 3	5.358
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.499
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.509
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.680
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.828
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.657
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.942
	CNS0095610	Silvery flower (tetraploid) 1	7.051
	CNS0095611	Silvery flower (tetraploid) 2	8.355
	CNS0095612	Silvery flower (tetraploid) 3	4.537
	CNS0095613	Golden flower (tetraploid) 1	3.258
	CNS0095614	Golden flower (tetraploid) 2	5.041
	CNS0095615	Golden flower (tetraploid) 3	4.023
CRA001975	CRR073297	Stem 1	7.882
	CRR073298	Stem 2	7.287
	CRR073299	Stem 3	7.506
	CRR073300	Leaf 1	8.011
	CRR073301	Leaf 2	5.211
	CRR073302	Leaf 3	4.976
	CRR073303	Juvenile bud 1	5.335
	CRR073304	Juvenile bud 2	3.290
	CRR073305	Juvenile bud 3	4.882
	CRR073306	Third green 1	1.889
	CRR073307	Third green 2	1.367
	CRR073308	Third green 3	2.047
	CRR073309	Second white 1	1.146
	CRR073310	Second white 2	1.868
	CRR073311	Second white 3	1.091
	CRR073312	Silver flowering 1	0.377
	CRR073313	Silver flowering 2	0.889
	CRR073314	Silver flowering 3	0.924
	CRR073315	Gold flowering 1	4.671
	CRR073316	Gold flowering 2	9.638
	CRR073317	Gold flowering 3	11.668
	CRR073318	Tawny withering 1	4.254
	CRR073319	Tawny withering 2	1.208
	CRR073320	Tawny withering 3	2.731