Gene detail

Detail information of GWHGAAZE001684

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU30756.1	2.22585E-51	hypothetical protein MIMGU_mgv1a018041mg [Erythranthe guttata]
Swissprot	tr\|Q9FGS3\|FB287_ARATH	7E-10	Putative F-box protein At5g50220
trEMBL	tr\|A0A022QS53\|A0A022QS53_ERYGU	8E-52	Uncharacterized protein {ECO:0000313\|EMBL:EYU30756.1}
TAIR10	AT5G50220.1	0.000000003	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	57760603	57761804	+
GWHAAZE00000001	mRNA	57760603	57761804	+
GWHAAZE00000001	exon	57760603	57760848	+
GWHAAZE00000001	exon	57760986	57761804	+
GWHAAZE00000001	CDS	57760603	57760848	+
GWHAAZE00000001	CDS	57760986	57761804	+

Transcript Sequence
>GWHTAAZE001688 ATGTCTGACTATATTCCTCCAGAACTCATAGTTAATATCCTCTCATGGCTGCCTCCAAAGTCTCTTCTTCGATTCAGGTGCGTATGCAAATCATGGTGTTCTCTAATTTCAAGCCCTAATTTCATCGACATTCACACTAACCAACTCAATGCTTCTTCAAATCACAACACTCGCTTACTCGCCATGCGCTGGACTGGCCGTGTAAGTTACAGTAACAAAGTCTATCCTCTCGATTTCGATAGCGAGAAGAAAACTGGTTCTCGGCGAGCCCCTATTCGGTTCGTCACGAAACGTAGGTATGTTAGTGCATTGGGTTTTAATCCAAAAACTAATGATTACAAGATTGTCAATATTGGATATGAACGAATGCTCGGTGGATCCCGTTGTAATGGAGTTAGGGTTTACTCAGTTAAGGACGGGACTTGGAGGGCCATTAGTGCCCATGCTCCTCCCTATGATATTGTCCGCAACATGCCTTCGAATGTTGTTGTAAATGGATCTCTGTACTGGATTGCTAACCACGGGGTCTCGGGGACTTCTGACTTTCGGGCGATTAATCCGCCTAATTTGTTTGATACAGTTGACGATCTGGCGATTAATTCAATTATGGTGTTTGATACAGTTGAAGAGGTATTTCGCGAGATAATGTTGCCGAAAAGTTTAGTGTCCATAGCGACTTACAACTTGCGTCTCAAGGCAATTGGGGATTCACTTTCGGTCATCCAATATGAAAAACTTTGCAAACTTCATTCGGTATGGGTGATGAAAGAATATGGTGCAGTAGAGTCGTGGAGTAAAAAACTTAGTTTTGATTTTGAGTTGGGTTTTGGAAGGATATTGGGTTTTAGGGATAATGACGAAGTGGTATTGCCGAATGAAGACAAGGATTTGGTAGCTTATAACCCGATTACGCGACAAAGCACGAACCTTATGGCTGGCGGCCATAATAACTTATATTATGGCACTACCTACAAGGAGAGCTTAGGATTACTCCTCGAAGGAGAACAGATTTCAGCAACGCAAACACGTGAAGTCGAACCTACTTCATCAGGGGAGGAGGACTGA

Network for GWHGAAZE001684

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	41	3.70E-11
PF07734.14	FBA_1	162	299	6.50E-08
PF14226.7	DIOX_N	38	143	3.00E-26
PF03171.21	2OG-FeII_Oxy	190	288	1.60E-28

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005515	molecular_function	protein binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.109
	SRR3591706	second leaf	0.257
	SRR3591707	mature leaf	0.096
	SRR3591708	Shoot apex	0.007
	SRR3591709	Stem	0.142
	SRR3591710	White floral bud	0.306
	SRR3591711	White flower	0.287
	SRR3591712	Green floral bud	0.603
	SRR3591713	Yellow flower	0.082
SRP173429	SRR8316895	Juvenile bud stage	1.200
	SRR8316896	Juvenile bud stage	1.025
	SRR8316897	Juvenile bud stage	0.478
	SRR8316894	Third green stage	1.473
	SRR8316900	Third green stage	2.278
	SRR8316901	Third green stage	1.662
	SRR8316898	Complete white stage	0.296
	SRR8316899	Complete white stage	3.639
	SRR8316903	Complete white stage	0.767
	SRR8316902	Silver flowering stage	0.323
	SRR8316904	Silver flowering stage	0.906
	SRR8316905	Silver flowering stage	0.329
	SRR8316906	Gold flowering stage	0.500
	SRR8316907	Gold flowering stage	0.164
	SRR8316908	Gold flowering stage	0.564
SRP132670	SRR6706286	Control	2.569
	SRR6706287	Light intensity 50%	2.456
	SRR6706288	Light intensity 20%	2.921
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.685
	CNS0095593	Slightly white alabastrum(diploid) 2	2.470
	CNS0095594	Slightly white alabastrum(diploid) 3	1.387
	CNS0095595	Whole white alabastrum(diploid) 2	1.886
	CNS0095596	Whole white alabastrum(diploid) 3	2.295
	CNS0095597	Whole white alabastrum(diploid) 4	1.169
	CNS0095598	Silvery flower (diploied) 1	3.555
	CNS0095599	Silvery flower (diploied) 2	2.767
	CNS0095600	Silvery flower (diploied) 3	1.204
	CNS0095601	Golden flower (diploid) 1	1.248
	CNS0095602	Golden flower (diploid) 2	2.436
	CNS0095603	Golden flower (diploid) 3	1.984
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.410
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.783
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.550
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.097
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.863
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.231
	CNS0095610	Silvery flower (tetraploid) 1	0.868
	CNS0095611	Silvery flower (tetraploid) 2	1.015
	CNS0095612	Silvery flower (tetraploid) 3	0.540
	CNS0095613	Golden flower (tetraploid) 1	0.079
	CNS0095614	Golden flower (tetraploid) 2	0.561
	CNS0095615	Golden flower (tetraploid) 3	0.112
CRA001975	CRR073297	Stem 1	3.251
	CRR073298	Stem 2	2.254
	CRR073299	Stem 3	2.753
	CRR073300	Leaf 1	1.596
	CRR073301	Leaf 2	1.509
	CRR073302	Leaf 3	1.712
	CRR073303	Juvenile bud 1	1.769
	CRR073304	Juvenile bud 2	1.681
	CRR073305	Juvenile bud 3	1.804
	CRR073306	Third green 1	0.284
	CRR073307	Third green 2	0.038
	CRR073308	Third green 3	0.155
	CRR073309	Second white 1	0.215
	CRR073310	Second white 2	0.050
	CRR073311	Second white 3	0.105
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.408
	CRR073315	Gold flowering 1	0.443
	CRR073316	Gold flowering 2	0.502
	CRR073317	Gold flowering 3	0.676
	CRR073318	Tawny withering 1	0.565
	CRR073319	Tawny withering 2	0.651
	CRR073320	Tawny withering 3	0.795