Detail information of GWHGAAZE001689


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002325907.11.62572E-64thioredoxin f precursor family protein [Populus trichocarpa]
Swissprottr|P29450|TRXF_PEA3E-61Thioredoxin F-type, chloroplastic (Precursor)
trEMBLtr|A9PI12|A9PI12_POPTR6E-65Thioredoxin f family protein {ECO:0000313|EMBL:EEF00289.1}
TAIR10AT5G16400.12E-46thioredoxin F2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5782712557834719-
GWHAAZE00000001mRNA5782712557834719-
GWHAAZE00000001exon5783438257834719-
GWHAAZE00000001exon5782766257827761-
GWHAAZE00000001exon5782712557827271-
GWHAAZE00000001CDS5783438257834719-
GWHAAZE00000001CDS5782766257827761-
GWHAAZE00000001CDS5782712557827271-
Transcript Sequence

Network for GWHGAAZE001689

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04770.13ZF-HD_dimer2263.00E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors Familyzf-HD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf133.554
SRR3591706second leaf505.542
SRR3591707mature leaf925.336
SRR3591708Shoot apex195.754
SRR3591709Stem144.375
SRR3591710White floral bud135.849
SRR3591711White flower172.584
SRR3591712Green floral bud144.793
SRR3591713Yellow flower266.715
SRP173429 SRR8316895Juvenile bud stage 106.899
SRR8316896Juvenile bud stage 125.512
SRR8316897Juvenile bud stage 78.952
SRR8316894Third green stage 60.345
SRR8316900Third green stage 195.045
SRR8316901Third green stage 184.934
SRR8316898Complete white stage 88.251
SRR8316899Complete white stage 216.440
SRR8316903Complete white stage 117.366
SRR8316902Silver flowering stage136.287
SRR8316904Silver flowering stage164.708
SRR8316905Silver flowering stage100.949
SRR8316906Gold flowering stage 319.247
SRR8316907Gold flowering stage 441.645
SRR8316908Gold flowering stage 347.552
SRP132670SRR6706286Control240.303
SRR6706287Light intensity 50%216.873
SRR6706288Light intensity 20%223.989
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1192.747
CNS0095593Slightly white alabastrum(diploid) 2193.303
CNS0095594Slightly white alabastrum(diploid) 3153.599
CNS0095595Whole white alabastrum(diploid) 2180.822
CNS0095596Whole white alabastrum(diploid) 3195.702
CNS0095597Whole white alabastrum(diploid) 4167.235
CNS0095598Silvery flower (diploied) 1261.469
CNS0095599Silvery flower (diploied) 2279.052
CNS0095600Silvery flower (diploied) 3247.262
CNS0095601Golden flower (diploid) 1320.633
CNS0095602Golden flower (diploid) 2305.814
CNS0095603Golden flower (diploid) 3293.661
CNS0095604Slightly white alabastrum(tetraploid) 1182.159
CNS0095605Slightly white alabastrum(tetraploid) 2191.829
CNS0095606Slightly white alabastrum(tetraploid) 3274.981
CNS0095607Whole white alabastrum(tetraploid) 1109.796
CNS0095608Whole white alabastrum(tetraploid) 2141.812
CNS0095609Whole white alabastrum(tetraploid) 3244.366
CNS0095610Silvery flower (tetraploid) 1347.872
CNS0095611Silvery flower (tetraploid) 2332.788
CNS0095612Silvery flower (tetraploid) 3295.617
CNS0095613Golden flower (tetraploid) 1364.632
CNS0095614Golden flower (tetraploid) 2392.490
CNS0095615Golden flower (tetraploid) 3239.588
CRA001975CRR073297Stem 1213.684
CRR073298Stem 2209.680
CRR073299Stem 3291.956
CRR073300Leaf 1200.836
CRR073301Leaf 2230.988
CRR073302Leaf 3276.565
CRR073303Juvenile bud 1303.015
CRR073304Juvenile bud 2329.830
CRR073305Juvenile bud 3215.902
CRR073306Third green 1280.315
CRR073307Third green 2211.001
CRR073308Third green 3198.139
CRR073309Second white 1548.620
CRR073310Second white 2498.704
CRR073311Second white 3379.358
CRR073312Silver flowering 1444.854
CRR073313Silver flowering 2404.505
CRR073314Silver flowering 3389.382
CRR073315Gold flowering 12173.456
CRR073316Gold flowering 22048.667
CRR073317Gold flowering 31724.423
CRR073318Tawny withering 1104.230
CRR073319Tawny withering 2103.674
CRR073320Tawny withering 385.382