Gene detail

Detail information of GWHGAAZE001704

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011077195.1	3.0457E-141	PREDICTED: CBS domain-containing protein CBSX6 [Sesamum indicum]
Swissprot	tr\|Q8GZA4\|CBSX6_ARATH	9E-117	CBS domain-containing protein CBSX6
trEMBL	tr\|K4BSW1\|K4BSW1_SOLLC	4E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g056630.2.1}
TAIR10	AT1G65320.1	6E-91	Cystathionine beta-synthase (CBS) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	58386570	58387583	-
GWHAAZE00000001	mRNA	58386570	58387583	-
GWHAAZE00000001	exon	58386570	58387583	-
GWHAAZE00000001	CDS	58386570	58387583	-

Transcript Sequence
>GWHTAAZE001708 ATGATGAAGCATGGTGTTAGGCGTCTCCTCGTACCCAAAAGCTTAGGATGGAAAGGCATGAGCAAGCGATTCTCAATCCTCTACAACGGCAAGTGGCTCAAGAACCTCGACAACACCACTACCCCCAGCAGCAGCAGCAACTCTATCAGCTTCACCACCACCACCACTACCACCACCACCACCACCACCACAGCCGCCACGGGCCCATCTTCTTCCACCACCGCCATCCGTGACAAGTTCTGCTGTCTCTCTCGAGAAGACGTGATCCGTTTCCTCATTGGTTGCCTCGGCGCCTTAGCTCCCCTCCCTCTCTCCTCCATCTTCTCTGTCGGAGCCATCAACCTAAACTACTGCTCCATTGATGCTTCCCTCCCGGCAATTGAGGCTACCCGGATGGTACCCCAGGACCCGAGCGCTGTCGCGGTCGTGGAGCCCACATCGGACGGTCAACAACAAAAGAAGAAGATCATTGGAGAGATCTCAGCCACTAAACTATGGAAATGCGATCACCTAGCCGCAGCATGGGCTTTAGCTAATCTCTCAGCCGGCCAATTTGTAATGGGAGTTGAGGATAACATGACCGCCACTTCAACCTCCCTTAATTTTCCTGCTAATGAAAGTGAAGGAGATACTAATTCATTATCCAACGGTGGTGGTGGCTCGGTAACGAGGGCAAGGAAATTTAGCAGTAGGAGTATCGGGTTCTTTAGCAACCCATCGGGCCAGAGTTTTGGTTTGGGCCGGAGTATGTATAGGGGTAGAAGCGCACCCTTGACATGTAAGGTTTCTAGCTCATTGGCTGCAGTAATGGCACAAATGTTGTCTCACCGGGCCACGCATGTGTGGGTCACCGAGGTTGATAACGAGGATTGTTTGGTGGGTGTTGTGGGCTATGCTGACATACTAGGTGCGGTAACAAGGCAACCGTCTCCTGCTTTGGCTTCTGCTTCATCTGTTTCCATTTCTGTTTCTGTTGGCGCAACCGCTACTATTCCGGAAAATTACACGGCTTGA

Network for GWHGAAZE001704

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00571.29	CBS	256	305	0.00018
PF00400.33	WD40	127	158	0.011
PF00400.33	WD40	164	200	0.00052
PF00400.33	WD40	211	246	0.0039
PF00400.33	WD40	258	289	4.20E-05
PF00400.33	WD40	297	342	0.012

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.565
	SRR3591706	second leaf	13.445
	SRR3591707	mature leaf	10.163
	SRR3591708	Shoot apex	16.229
	SRR3591709	Stem	23.329
	SRR3591710	White floral bud	45.630
	SRR3591711	White flower	76.999
	SRR3591712	Green floral bud	53.504
	SRR3591713	Yellow flower	124.958
SRP173429	SRR8316895	Juvenile bud stage	16.715
	SRR8316896	Juvenile bud stage	20.925
	SRR8316897	Juvenile bud stage	10.600
	SRR8316894	Third green stage	8.743
	SRR8316900	Third green stage	38.438
	SRR8316901	Third green stage	37.292
	SRR8316898	Complete white stage	17.427
	SRR8316899	Complete white stage	48.997
	SRR8316903	Complete white stage	34.275
	SRR8316902	Silver flowering stage	43.392
	SRR8316904	Silver flowering stage	37.039
	SRR8316905	Silver flowering stage	20.110
	SRR8316906	Gold flowering stage	93.563
	SRR8316907	Gold flowering stage	87.627
	SRR8316908	Gold flowering stage	89.546
SRP132670	SRR6706286	Control	52.201
	SRR6706287	Light intensity 50%	51.006
	SRR6706288	Light intensity 20%	49.767
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.646
	CNS0095593	Slightly white alabastrum(diploid) 2	39.732
	CNS0095594	Slightly white alabastrum(diploid) 3	36.959
	CNS0095595	Whole white alabastrum(diploid) 2	40.226
	CNS0095596	Whole white alabastrum(diploid) 3	48.381
	CNS0095597	Whole white alabastrum(diploid) 4	40.805
	CNS0095598	Silvery flower (diploied) 1	33.581
	CNS0095599	Silvery flower (diploied) 2	28.102
	CNS0095600	Silvery flower (diploied) 3	63.248
	CNS0095601	Golden flower (diploid) 1	35.190
	CNS0095602	Golden flower (diploid) 2	86.048
	CNS0095603	Golden flower (diploid) 3	82.536
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.498
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.215
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.682
	CNS0095607	Whole white alabastrum(tetraploid) 1	47.548
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.337
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.087
	CNS0095610	Silvery flower (tetraploid) 1	48.294
	CNS0095611	Silvery flower (tetraploid) 2	47.060
	CNS0095612	Silvery flower (tetraploid) 3	36.272
	CNS0095613	Golden flower (tetraploid) 1	55.728
	CNS0095614	Golden flower (tetraploid) 2	52.476
	CNS0095615	Golden flower (tetraploid) 3	80.972
CRA001975	CRR073297	Stem 1	33.134
	CRR073298	Stem 2	30.765
	CRR073299	Stem 3	33.736
	CRR073300	Leaf 1	49.226
	CRR073301	Leaf 2	45.584
	CRR073302	Leaf 3	37.505
	CRR073303	Juvenile bud 1	51.580
	CRR073304	Juvenile bud 2	51.789
	CRR073305	Juvenile bud 3	71.641
	CRR073306	Third green 1	74.187
	CRR073307	Third green 2	71.726
	CRR073308	Third green 3	75.287
	CRR073309	Second white 1	72.245
	CRR073310	Second white 2	60.538
	CRR073311	Second white 3	71.955
	CRR073312	Silver flowering 1	97.009
	CRR073313	Silver flowering 2	107.630
	CRR073314	Silver flowering 3	75.499
	CRR073315	Gold flowering 1	22.412
	CRR073316	Gold flowering 2	16.892
	CRR073317	Gold flowering 3	20.028
	CRR073318	Tawny withering 1	43.348
	CRR073319	Tawny withering 2	26.745
	CRR073320	Tawny withering 3	37.041