Gene detail

Detail information of GWHGAAZE001708

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009617790.1	1.2333E-133	PREDICTED: ubiquinol-cytochrome-c reductase complex assembly factor 1-like [Nicotiana tomentosiformis]
trEMBL	tr\|A0A061G097\|A0A061G097_THECC	8E-130	Ubiquinol-cytochrome C chaperone family protein isoform 1 {ECO:0000313\|EMBL:EOY22793.1}
TAIR10	AT5G51220.1	1E-92	ubiquinol-cytochrome C chaperone family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	58446435	58450140	-
GWHAAZE00000001	mRNA	58446435	58450140	-
GWHAAZE00000001	exon	58446435	58446513	-
GWHAAZE00000001	exon	58446984	58447108	-
GWHAAZE00000001	exon	58447787	58447953	-
GWHAAZE00000001	exon	58448695	58448908	-
GWHAAZE00000001	exon	58449816	58450004	-
GWHAAZE00000001	exon	58450135	58450140	-
GWHAAZE00000001	CDS	58450135	58450140	-
GWHAAZE00000001	CDS	58449816	58450004	-
GWHAAZE00000001	CDS	58448695	58448908	-
GWHAAZE00000001	CDS	58447787	58447953	-
GWHAAZE00000001	CDS	58446984	58447108	-
GWHAAZE00000001	CDS	58446435	58446513	-

Transcript Sequence
>GWHTAAZE001712 ATGTATATTGCAGCCAAAATGCTGCCGAGATGGAGTAGAGCCGTATCGCATCTCCGTAGGTTTGGATCAGAGCGTAATATAGAAATTAATAGAGATTTGTACGGTTTTCCATGTCGAAGCTATTCAAAGGTCGCTGCAGCTACTGCGCTGACTATGCCGAATACTTCTGAGAAAAGCTATGCAAATAGATCAGAGGTAAATTTGAATAAGATGTTTTGGTCTAAGCCTTGTTCATTGGCGTTGGCTCCTGATTCGCCACTAAGAGTTGAAGAGCCAAAATATGAGGGAATCAGGAGGATTATCCTTAAGCTGATGCTCTTCTACAGTAAACAAAGCAAGTCTATTCGAGGGGCAAATGTGATTTACAATCGTGTCATTTCTCAAGTTGACAAACCTGCCATCTATGATGTATTTAGCTTGGAGAAGACCTTTAAAACAACATTTTCTTTGCTTGTACTGCATATGTGGCTTATCTTGCGCCGCTTGAAAGAAGATGGAAAGGAAGGTGTTGAACTGGGGCAGTACTTGTATGAGACTTACAATCATGATGTAGAGTTGAGAGTTTCCAAGGCTGGGGTTAATTTACTGTTGTCTAGATGGATGAAGGATTTGGAGAAAATATTCTATGGCAATATTGTTGCTTATGATGCCGCAATGCTTCCAGAAGCTAAACAGGATGAGTTGCAAAAGGTGATATGGAGGAATGTCTTCTCTGATGATGGTAAACTGGAAGCAAATGATGCTGCATTGCGTGAAGTACAGGCAAGTTCACTGATATAG

Network for GWHGAAZE001708

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0010

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03981.13	Ubiq_cyt_C_chap	138	243	1.50E-27
PF00249.32	Myb_DNA-binding	14	62	5.60E-14
PF00249.32	Myb_DNA-binding	69	111	6.50E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.454
	SRR3591706	second leaf	9.656
	SRR3591707	mature leaf	12.798
	SRR3591708	Shoot apex	16.038
	SRR3591709	Stem	16.635
	SRR3591710	White floral bud	18.284
	SRR3591711	White flower	22.076
	SRR3591712	Green floral bud	23.660
	SRR3591713	Yellow flower	18.586
SRP173429	SRR8316895	Juvenile bud stage	16.365
	SRR8316896	Juvenile bud stage	26.589
	SRR8316897	Juvenile bud stage	17.329
	SRR8316894	Third green stage	11.189
	SRR8316900	Third green stage	36.852
	SRR8316901	Third green stage	33.886
	SRR8316898	Complete white stage	15.663
	SRR8316899	Complete white stage	35.142
	SRR8316903	Complete white stage	22.550
	SRR8316902	Silver flowering stage	14.611
	SRR8316904	Silver flowering stage	23.431
	SRR8316905	Silver flowering stage	11.813
	SRR8316906	Gold flowering stage	38.077
	SRR8316907	Gold flowering stage	39.221
	SRR8316908	Gold flowering stage	38.530
SRP132670	SRR6706286	Control	31.894
	SRR6706287	Light intensity 50%	30.556
	SRR6706288	Light intensity 20%	32.811
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.600
	CNS0095593	Slightly white alabastrum(diploid) 2	22.187
	CNS0095594	Slightly white alabastrum(diploid) 3	24.836
	CNS0095595	Whole white alabastrum(diploid) 2	22.487
	CNS0095596	Whole white alabastrum(diploid) 3	23.872
	CNS0095597	Whole white alabastrum(diploid) 4	17.988
	CNS0095598	Silvery flower (diploied) 1	21.202
	CNS0095599	Silvery flower (diploied) 2	18.447
	CNS0095600	Silvery flower (diploied) 3	27.750
	CNS0095601	Golden flower (diploid) 1	16.644
	CNS0095602	Golden flower (diploid) 2	24.091
	CNS0095603	Golden flower (diploid) 3	24.315
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.014
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.018
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.811
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.482
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.049
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.100
	CNS0095610	Silvery flower (tetraploid) 1	32.529
	CNS0095611	Silvery flower (tetraploid) 2	33.362
	CNS0095612	Silvery flower (tetraploid) 3	28.905
	CNS0095613	Golden flower (tetraploid) 1	22.083
	CNS0095614	Golden flower (tetraploid) 2	32.697
	CNS0095615	Golden flower (tetraploid) 3	22.956
CRA001975	CRR073297	Stem 1	17.250
	CRR073298	Stem 2	16.153
	CRR073299	Stem 3	13.660
	CRR073300	Leaf 1	19.209
	CRR073301	Leaf 2	15.566
	CRR073302	Leaf 3	17.708
	CRR073303	Juvenile bud 1	14.710
	CRR073304	Juvenile bud 2	15.519
	CRR073305	Juvenile bud 3	9.968
	CRR073306	Third green 1	9.302
	CRR073307	Third green 2	8.401
	CRR073308	Third green 3	8.065
	CRR073309	Second white 1	11.476
	CRR073310	Second white 2	12.065
	CRR073311	Second white 3	9.348
	CRR073312	Silver flowering 1	6.835
	CRR073313	Silver flowering 2	3.955
	CRR073314	Silver flowering 3	5.607
	CRR073315	Gold flowering 1	11.047
	CRR073316	Gold flowering 2	11.750
	CRR073317	Gold flowering 3	5.975
	CRR073318	Tawny withering 1	9.218
	CRR073319	Tawny withering 2	11.097
	CRR073320	Tawny withering 3	11.198