Gene detail

Detail information of GWHGAAZE001718

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009603851.1	PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q84XU2\|PPP5_ARATH	Serine/threonine-protein phosphatase 5
trEMBL	tr\|G5ELZ4\|G5ELZ4_TOBAC	Serine/threonine-protein phosphatase 5 {ECO:0000313\|EMBL:BAL14275.1}
TAIR10	AT2G42810.1	protein phosphatase 5.2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	58567022	58586414	+
GWHAAZE00000001	mRNA	58567022	58586414	+
GWHAAZE00000001	exon	58567022	58567249	+
GWHAAZE00000001	exon	58567326	58567397	+
GWHAAZE00000001	exon	58570284	58570434	+
GWHAAZE00000001	exon	58571273	58571381	+
GWHAAZE00000001	exon	58571476	58571593	+
GWHAAZE00000001	exon	58576051	58576198	+
GWHAAZE00000001	exon	58577343	58577591	+
GWHAAZE00000001	exon	58579892	58580017	+
GWHAAZE00000001	exon	58580099	58580199	+
GWHAAZE00000001	exon	58585845	58585919	+
GWHAAZE00000001	exon	58586355	58586414	+
GWHAAZE00000001	CDS	58567022	58567249	+
GWHAAZE00000001	CDS	58567326	58567397	+
GWHAAZE00000001	CDS	58570284	58570434	+
GWHAAZE00000001	CDS	58571273	58571381	+
GWHAAZE00000001	CDS	58571476	58571593	+
GWHAAZE00000001	CDS	58576051	58576198	+
GWHAAZE00000001	CDS	58577343	58577591	+
GWHAAZE00000001	CDS	58579892	58580017	+
GWHAAZE00000001	CDS	58580099	58580199	+
GWHAAZE00000001	CDS	58585845	58585919	+
GWHAAZE00000001	CDS	58586355	58586414	+

Transcript Sequence
>GWHTAAZE001722 ATAAGGTGGCATTGGAGCTTAACTACTGCTAATGTGACTTGTTTTGCAGCCCACAAATATTCTCAAGCTATTGATCTCTATACGCAAGCGATTGCATTAAACAGTGAAAATGCAGTGTACTGGGCTAACCGTGCATTGGCCCACACAAAGCTGGAGGAGTATGGTAGTGCAATACAGGACGCTACAAAGGCTGTTGAGATTGACCGTAAATATTCGAAGGCATGCTTTGGTTATTACAGGCGGGGTGCTGCATATCTTGCAATGGGGAAGTTTAAAGACGCACTAAAGGATTTTCAGCAGGTAAAGAGACTCTGTCCAAATGATCCTGATGCTGCTAAGAAATTGAAGGAATGTGAGAAAGCAGTCATGAAGCTCAAGTTTGAGGAAGCAATTGCTGCACCGGATTCTCAAAGACGTTCAGTGGCTGAGTCCATTGATTTTCATACTATAGAAGTAGAGCCACAGTATGCCGGTGCTAGAATAGAGGGAGAGGTGGTAACCCTTGAATTTGTGAAGAAAATGCTGGATGACTTCAAGAATCAGAAGTGTTTACACAAACGATACGCATTCCAGATTGTCCTACAGACAATGGAAATGCTGAGAGCTTTGCCATCACTTGTGGATATTAAAATTCCTGATGGGAAACACTTCACTGTTTGTGGTGATGTTCATGGTCAGTTCTATGATCTACTAAATATTTTTGAGCTCAATGGGTTACCCTCAGATGAGAATCCATATCTATTTAATGGCGACTTCGTGGATAGGGGTTCCTTTTCTCTGGAGGTCATACTCACACTGTTTGCGTTTAAATGCATGTCCCCCTCTGCTATCCATCTTGCTCGAGGAAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAAGGCGAGGTCAAGTCGAAGTTGAGTGATAAATTTGTGGAGCTCTTTGCTGAAGTGTTTTGCTGTTTACCTTTGGCTCATGTAATAAATGAGAAGGTTTTCGTGGTTCATGGAGGTCTTTTCAGTGTTGATGGGGTCAAGCTCTCTGACATTAGAGCTATTGACCGTTTTTGTGAGCCCCCTGAGGAAGGGTTGATGTGCGAACTGTTGTGGAGTGATCCACAACCTCAACCTGGAAGAGGACCTAGCAAGCGGGGTGTAGGTCTTTCTTTCGGAGGAGATGTAACGAAAAGATTTTTGCAGGAAAACAATCTTGATTTAGTTGTGCGTTCTCACGAAGTGAAGGATGAAGGATATGAGATTGAGCATGATGGTAAACTCATTACTGTTTTCTCTGCTCCAAACTATTGCGATCAGATGGGTAACAAAGGTGCATTTATTCGTTTTGAAGCCTCGGATTTGAAGCCAAACATAGTTACTTTCTCAGCAGTGCCGCATCCTGATGTGAAGCCAATGGCGTATGCAAACAACTTCCTCAGAATGTTCTCATAG

Network for GWHGAAZE001718

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13181.7	TPR_8	40	70	0.0037
PF00515.29	TPR_1	77	108	1.80E-08
PF08321.13	PPP5	115	208	6.60E-28
PF00149.29	Metallophos	216	410	2.60E-32
PF02485.22	Branch	4	40	1.20E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04460	PPP5C	MAPK signaling pathway	map04010

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0016787	molecular_function	hydrolase activity
GO:0005515	molecular_function	protein binding
GO:0008375	molecular_function	acetylglucosaminyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.783
	SRR3591706	second leaf	32.276
	SRR3591707	mature leaf	46.819
	SRR3591708	Shoot apex	52.787
	SRR3591709	Stem	51.989
	SRR3591710	White floral bud	94.896
	SRR3591711	White flower	96.817
	SRR3591712	Green floral bud	69.011
	SRR3591713	Yellow flower	96.320
SRP173429	SRR8316895	Juvenile bud stage	32.314
	SRR8316896	Juvenile bud stage	50.425
	SRR8316897	Juvenile bud stage	23.263
	SRR8316894	Third green stage	19.741
	SRR8316900	Third green stage	59.834
	SRR8316901	Third green stage	60.085
	SRR8316898	Complete white stage	36.464
	SRR8316899	Complete white stage	89.104
	SRR8316903	Complete white stage	51.835
	SRR8316902	Silver flowering stage	26.394
	SRR8316904	Silver flowering stage	40.484
	SRR8316905	Silver flowering stage	18.659
	SRR8316906	Gold flowering stage	59.391
	SRR8316907	Gold flowering stage	54.753
	SRR8316908	Gold flowering stage	59.782
SRP132670	SRR6706286	Control	51.887
	SRR6706287	Light intensity 50%	57.922
	SRR6706288	Light intensity 20%	60.826
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.720
	CNS0095593	Slightly white alabastrum(diploid) 2	41.862
	CNS0095594	Slightly white alabastrum(diploid) 3	32.948
	CNS0095595	Whole white alabastrum(diploid) 2	33.994
	CNS0095596	Whole white alabastrum(diploid) 3	36.318
	CNS0095597	Whole white alabastrum(diploid) 4	36.541
	CNS0095598	Silvery flower (diploied) 1	40.817
	CNS0095599	Silvery flower (diploied) 2	36.357
	CNS0095600	Silvery flower (diploied) 3	58.397
	CNS0095601	Golden flower (diploid) 1	38.544
	CNS0095602	Golden flower (diploid) 2	59.250
	CNS0095603	Golden flower (diploid) 3	54.225
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.801
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.068
	CNS0095606	Slightly white alabastrum(tetraploid) 3	66.557
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.324
	CNS0095609	Whole white alabastrum(tetraploid) 3	55.415
	CNS0095610	Silvery flower (tetraploid) 1	64.292
	CNS0095611	Silvery flower (tetraploid) 2	74.212
	CNS0095612	Silvery flower (tetraploid) 3	54.842
	CNS0095613	Golden flower (tetraploid) 1	46.690
	CNS0095614	Golden flower (tetraploid) 2	60.377
	CNS0095615	Golden flower (tetraploid) 3	62.725
CRA001975	CRR073297	Stem 1	48.303
	CRR073298	Stem 2	47.177
	CRR073299	Stem 3	45.321
	CRR073300	Leaf 1	59.163
	CRR073301	Leaf 2	51.285
	CRR073302	Leaf 3	52.381
	CRR073303	Juvenile bud 1	57.325
	CRR073304	Juvenile bud 2	58.813
	CRR073305	Juvenile bud 3	65.331
	CRR073306	Third green 1	42.866
	CRR073307	Third green 2	43.680
	CRR073308	Third green 3	43.404
	CRR073309	Second white 1	36.794
	CRR073310	Second white 2	34.734
	CRR073311	Second white 3	29.353
	CRR073312	Silver flowering 1	22.516
	CRR073313	Silver flowering 2	23.877
	CRR073314	Silver flowering 3	18.420
	CRR073315	Gold flowering 1	29.986
	CRR073316	Gold flowering 2	41.116
	CRR073317	Gold flowering 3	35.089
	CRR073318	Tawny withering 1	38.225
	CRR073319	Tawny withering 2	35.225
	CRR073320	Tawny withering 3	41.757