Detail information of GWHGAAZE001722


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011098065.10PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Sesamum indicum]
Swissprottr|E0CTY1|GATA_VITVI0Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03150} (Precursor)
trEMBLtr|A0A022QW39|A0A022QW39_ERYGU0Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial {ECO:0000256|HAMAP-Rule:MF_03150}
TAIR10AT3G25660.14E-158Amidase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5870785558717772-
GWHAAZE00000001mRNA5870785558717772-
GWHAAZE00000001exon5871761458717772-
GWHAAZE00000001exon5871613258716183-
GWHAAZE00000001exon5871272458713058-
GWHAAZE00000001exon5871204658712222-
GWHAAZE00000001exon5871184558711939-
GWHAAZE00000001exon5871138358711458-
GWHAAZE00000001exon5871111658711193-
GWHAAZE00000001exon5871019758710290-
GWHAAZE00000001exon5871002258710071-
GWHAAZE00000001exon5870785558707992-
GWHAAZE00000001CDS5871761458717772-
GWHAAZE00000001CDS5871613258716183-
GWHAAZE00000001CDS5871272458713058-
GWHAAZE00000001CDS5871204658712222-
GWHAAZE00000001CDS5871184558711939-
GWHAAZE00000001CDS5871138358711458-
GWHAAZE00000001CDS5871111658711193-
GWHAAZE00000001CDS5871019758710290-
GWHAAZE00000001CDS5871002258710071-
GWHAAZE00000001CDS5870785558707992-
Transcript Sequence

Network for GWHGAAZE001722

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01425.22Amidase1545.60E-14
PF01425.22Amidase964139.80E-92
PF13041.7PPR_224717.40E-14
PF13041.7PPR_2921402.20E-14
PF01535.21PPR1661880.067
PF13041.7PPR_21972467.70E-16
PF13041.7PPR_22673161.40E-17
PF12854.8PPR_13353652.30E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02433gatA, QRSL1 Metabolic pathways map01100
Aminoacyl-tRNA biosynthesismap00970

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0030956cellular_componentglutamyl-tRNA(Gln) amidotransferase complex
GO:0050567molecular_functionglutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.550
SRR3591706second leaf12.633
SRR3591707mature leaf12.576
SRR3591708Shoot apex16.723
SRR3591709Stem6.699
SRR3591710White floral bud8.344
SRR3591711White flower11.134
SRR3591712Green floral bud12.027
SRR3591713Yellow flower12.379
SRP173429 SRR8316895Juvenile bud stage 10.114
SRR8316896Juvenile bud stage 15.891
SRR8316897Juvenile bud stage 6.533
SRR8316894Third green stage 7.121
SRR8316900Third green stage 23.120
SRR8316901Third green stage 17.496
SRR8316898Complete white stage 5.186
SRR8316899Complete white stage 18.127
SRR8316903Complete white stage 7.777
SRR8316902Silver flowering stage5.747
SRR8316904Silver flowering stage7.935
SRR8316905Silver flowering stage3.870
SRR8316906Gold flowering stage 16.537
SRR8316907Gold flowering stage 15.495
SRR8316908Gold flowering stage 16.824
SRP132670SRR6706286Control17.176
SRR6706287Light intensity 50%17.971
SRR6706288Light intensity 20%21.711
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.340
CNS0095593Slightly white alabastrum(diploid) 211.394
CNS0095594Slightly white alabastrum(diploid) 311.194
CNS0095595Whole white alabastrum(diploid) 211.289
CNS0095596Whole white alabastrum(diploid) 310.569
CNS0095597Whole white alabastrum(diploid) 49.686
CNS0095598Silvery flower (diploied) 114.053
CNS0095599Silvery flower (diploied) 29.032
CNS0095600Silvery flower (diploied) 318.087
CNS0095601Golden flower (diploid) 18.567
CNS0095602Golden flower (diploid) 216.395
CNS0095603Golden flower (diploid) 314.115
CNS0095604Slightly white alabastrum(tetraploid) 116.201
CNS0095605Slightly white alabastrum(tetraploid) 213.992
CNS0095606Slightly white alabastrum(tetraploid) 320.325
CNS0095607Whole white alabastrum(tetraploid) 17.999
CNS0095608Whole white alabastrum(tetraploid) 28.637
CNS0095609Whole white alabastrum(tetraploid) 323.264
CNS0095610Silvery flower (tetraploid) 119.530
CNS0095611Silvery flower (tetraploid) 221.846
CNS0095612Silvery flower (tetraploid) 320.625
CNS0095613Golden flower (tetraploid) 17.785
CNS0095614Golden flower (tetraploid) 215.590
CNS0095615Golden flower (tetraploid) 38.710
CRA001975CRR073297Stem 132.518
CRR073298Stem 227.615
CRR073299Stem 330.984
CRR073300Leaf 130.049
CRR073301Leaf 227.281
CRR073302Leaf 329.908
CRR073303Juvenile bud 131.101
CRR073304Juvenile bud 220.874
CRR073305Juvenile bud 329.594
CRR073306Third green 19.295
CRR073307Third green 26.027
CRR073308Third green 39.291
CRR073309Second white 119.732
CRR073310Second white 215.536
CRR073311Second white 317.886
CRR073312Silver flowering 117.399
CRR073313Silver flowering 214.669
CRR073314Silver flowering 316.015
CRR073315Gold flowering 119.986
CRR073316Gold flowering 234.937
CRR073317Gold flowering 324.063
CRR073318Tawny withering 112.774
CRR073319Tawny withering 211.746
CRR073320Tawny withering 316.436