Detail information of GWHGAAZE001723


Functional Annotation

DatabaseOrthologsE valueAnnotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5874792258748840-
GWHAAZE00000001mRNA5874792258748840-
GWHAAZE00000001exon5874792258747998-
GWHAAZE00000001exon5874873858748840-
GWHAAZE00000001CDS5874873858748840-
GWHAAZE00000001CDS5874792258747998-
Transcript Sequence

Network for GWHGAAZE001723

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0256


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01113.21DapB_N381651.20E-14
PF05173.15DapB_C2052714.90E-09
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0009089biological_processlysine biosynthetic process via diaminopimelate
GO:0055114biological_processoxidation-reduction process
GO:0008839molecular_function4-hydroxy-tetrahydrodipicolinate reductase

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.035
SRR3591706second leaf2.461
SRR3591707mature leaf15.458
SRR3591708Shoot apex3.935
SRR3591709Stem17.193
SRR3591710White floral bud13.844
SRR3591711White flower23.808
SRR3591712Green floral bud8.386
SRR3591713Yellow flower23.018
SRP173429 SRR8316895Juvenile bud stage 6.509
SRR8316896Juvenile bud stage 14.194
SRR8316897Juvenile bud stage 5.962
SRR8316894Third green stage 4.585
SRR8316900Third green stage 10.025
SRR8316901Third green stage 12.964
SRR8316898Complete white stage 3.037
SRR8316899Complete white stage 14.358
SRR8316903Complete white stage 8.045
SRR8316902Silver flowering stage4.537
SRR8316904Silver flowering stage7.747
SRR8316905Silver flowering stage1.573
SRR8316906Gold flowering stage 17.085
SRR8316907Gold flowering stage 13.914
SRR8316908Gold flowering stage 16.147
SRP132670SRR6706286Control1.673
SRR6706287Light intensity 50%1.512
SRR6706288Light intensity 20%1.362
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.413
CNS0095593Slightly white alabastrum(diploid) 212.627
CNS0095594Slightly white alabastrum(diploid) 319.702
CNS0095595Whole white alabastrum(diploid) 214.120
CNS0095596Whole white alabastrum(diploid) 312.369
CNS0095597Whole white alabastrum(diploid) 414.853
CNS0095598Silvery flower (diploied) 113.190
CNS0095599Silvery flower (diploied) 215.908
CNS0095600Silvery flower (diploied) 318.343
CNS0095601Golden flower (diploid) 117.361
CNS0095602Golden flower (diploid) 217.425
CNS0095603Golden flower (diploid) 318.499
CNS0095604Slightly white alabastrum(tetraploid) 16.053
CNS0095605Slightly white alabastrum(tetraploid) 25.744
CNS0095606Slightly white alabastrum(tetraploid) 35.863
CNS0095607Whole white alabastrum(tetraploid) 18.590
CNS0095608Whole white alabastrum(tetraploid) 28.773
CNS0095609Whole white alabastrum(tetraploid) 310.634
CNS0095610Silvery flower (tetraploid) 131.005
CNS0095611Silvery flower (tetraploid) 244.681
CNS0095612Silvery flower (tetraploid) 321.038
CNS0095613Golden flower (tetraploid) 127.294
CNS0095614Golden flower (tetraploid) 225.624
CNS0095615Golden flower (tetraploid) 351.108
CRA001975CRR073297Stem 14.360
CRR073298Stem 25.113
CRR073299Stem 34.557
CRR073300Leaf 12.671
CRR073301Leaf 21.591
CRR073302Leaf 30.692
CRR073303Juvenile bud 10.838
CRR073304Juvenile bud 22.562
CRR073305Juvenile bud 32.186
CRR073306Third green 11.389
CRR073307Third green 20.706
CRR073308Third green 30.632
CRR073309Second white 10.463
CRR073310Second white 22.829
CRR073311Second white 30.156
CRR073312Silver flowering 10.685
CRR073313Silver flowering 20.198
CRR073314Silver flowering 30.097
CRR073315Gold flowering 11.107
CRR073316Gold flowering 22.427
CRR073317Gold flowering 31.197
CRR073318Tawny withering 11.379
CRR073319Tawny withering 22.912
CRR073320Tawny withering 32.019