Gene detail

Detail information of GWHGAAZE001732

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008219738.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A0A068URS3\|A0A068URS3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_52 {ECO:0000313\|EMBL:CDP11195.1}
TAIR10	AT4G08850.1	3E-145	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	59070673	59075108	+
GWHAAZE00000001	mRNA	59070673	59075108	+
GWHAAZE00000001	exon	59070673	59071587	+
GWHAAZE00000001	exon	59073291	59073674	+
GWHAAZE00000001	exon	59073744	59073807	+
GWHAAZE00000001	exon	59073925	59074602	+
GWHAAZE00000001	exon	59074789	59075108	+
GWHAAZE00000001	CDS	59070673	59071587	+
GWHAAZE00000001	CDS	59073291	59073674	+
GWHAAZE00000001	CDS	59073744	59073807	+
GWHAAZE00000001	CDS	59073925	59074602	+
GWHAAZE00000001	CDS	59074789	59075108	+

Transcript Sequence
>GWHTAAZE001736 ATGTCAGGTTTAAAAGGTAACCTTTACAACTTCACGTTCTCATCCTTTCCAAATCTTACTTACTTTGACCTAAGCTTTAATGAATTCAATGGTACCATTCCGCTGCAAATTGGTACTCTATCAAATCTCAAGTACCTCGATTTGTCGGGCAATCATTTTTCGGGTATTATCCCACCAGAGATTGGGCGTTTAACAAGTCTTAAGATCCTTTATATGGCTGGAAATCAACTCACGGGCTCGATTCCTCGAGAGATAGGCCAACTAAAGTCTCTTTATGATCTTGGATTGCATCCAAACTTTCTCGAAGGGCCAATTCCTTCTTCTATTGGCAATTTAAAAAACTTGGCTCTTTTGTATCTCTATAACAATAAACTTTCATATTGCATTCCTCAAGAAATTGGAAATCTCATCAATCTCGTCGAGGTCTCTTTGGATGATAACAGTTTCATAGGTCGAATCCCTTCCACTTTTGGAAAGTTGAGTAATCTAATTGTCTTGAAATTGTTTAAAAATCAGTTGTCCGGTCCCATTCCCTCAAAAATAGGGATGTTGAGATCTCTCAAGTCTCTCAGCCTTCAGTTAAACAATCTTACAGGCTTAATCCCTCCATCTTTGGGTGGTCTAACCTCCTTAACCAATCTTCGTCTCTACGACAATCAACTTTCGGGTCCCATTCCAGAAGAACTAGGAAACTTGGAGTCCATAACCAACCTCCAATTGAGTCAAAATCGACTCAATGGTTCTATTCCTAATTCCCTTGGCAAATTGAGCAAGTTAGAAACTTTATTCCTCCGCGATAATCAACTTTCCGGTCCTATCCCACAGGATCTAGGTAACTTGAATCTAGTTGTTCTGGAAATCGATACAAATCAATTGTCTGGCCACTTGCCAGAGATTTTCCTTGGTGGAAAGCTTATCACGAGGAACAATATAAGTGGCAGTATACCAGCGACGCTTGGAAACTCTACTAAACTAGAAGAACTTGATCTTTCTTCAAATCATTTGGCTAAAGAGATTCCAAAGGAATTTGGGAAATTGAAGCATTTATCAAAGTTGGATTTGAGTGATAACCAACTTTCTGGCTCTGTACTTAAAGAACTCGACTCGTTGAGCGAGTTGTTGTATCTTGATCTGTCTGCTAATAGATTGAGTGGGCCCATAAAAGGTGTTCTTGGGGACTACTTACGTATGTTCTATTTAAATTTAAGCAAGAATCAATTTAGAGGGGAGATTCCAATTCAGATTACGAAGTTAGTCCAGCTTTCGAAACTTGATTTGAGCCATAACTCAATCTCGGGGGGTCCCATACCAAACAATAAGGCTTTTATGGATGCTTCCATAGACAAGTTGCGAGGAAACAAAGCACTTTTACTTCTCGGTGCGTTGATTATGCTTTTAATCTTGTATGAGCGAAGAAAGAGAAAAATAGAAACTAAAAGCATGGGTAAAGAATGCGAAAGTCTCTTCTCAATATTCGTATTTGATGGAAGAGCAACCTATGAAGAAATCGTAACATCTACGAAAGCTTTTGACACCCAATATTGTATTGGTAAGGGGGGATTTGGAAGCGTTTACAAAGCTATACTCTCCTCGGGCAATATTGTTGCTGTGAAGAAACTTCATTCAATATCGGATATGTTTGATCGAAAAGGCTTTCTAAATGAAGTGAGAGCTTTGACCGAGATAAAGCACCAAGACATTGTGAAGTTTTATGGATTTTGCTTACATGCTCAGCACTCATTTTTAATATATGAGTACCTTGAAAAAGGCAGTTTGGCATCAATATTAAGCAACGACGAAGAAGCTAAGAATCTGGATTGGACTAAAAGGATAAATATCATTAAGAGTGTGGCTCATGCTTTGTCTTACATGCACCATGATTGCGCCTCGCCTATTGTTCATCGAGACATATCAAGCAAAAATGTTTTACTTGATTCTGGATACGAGGCTAGTGTTTCTAATTTCGGCACAACAAAGTTTTTAAAACCAAACTCATCCAATTGGAGTACACTTGCAGGCACGTATGGTTATGTTGCACCAGAGTTTGCTTACATGATGAATGTAACTGAAAAGTGCGATGTGTATAGTTTTGGAGTGTTAGCATTAGAAGTGATCCAAGGAAAGCATCCCGGTGACTTGATCGCTATTGCTTTATCTTCATCGAATGAGGAGATACAGTTGAAAGACATGGTGGACCAACGCCTTTCATTTCCCTCACTCGGAATTGAGGAGGTATTGGTCTCTATTGTAAAAGCCGTGAGAGCATGTTTACATGCCAATCCACAATCAAGGCCAACGATGCGTGTTGTTTCTCAATTTTTATCGACTCGAACAATTGGCCTATCGGAGATTCATGTTTAG

Network for GWHGAAZE001732

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	17	77	3.90E-09
PF13855.7	LRR_8	185	245	1.20E-06
PF13855.7	LRR_8	324	383	1.60E-08
PF07714.18	PK_Tyr_Ser-Thr	515	773	4.50E-43
PF01535.21	PPR	174	204	0.00023
PF01535.21	PPR	211	238	0.037
PF13041.7	PPR_2	239	287	6.60E-16
PF13041.7	PPR_2	310	357	2.70E-11
PF12854.8	PPR_1	411	443	2.30E-06
PF13041.7	PPR_2	449	498	2.10E-10
PF13041.7	PPR_2	519	568	4.00E-08
PF12854.8	PPR_1	585	617	5.50E-13
PF12854.8	PPR_1	620	650	6.20E-11
PF13041.7	PPR_2	660	708	1.30E-15
PF13041.7	PPR_2	729	777	1.70E-17
PF01535.21	PPR	802	828	0.057
PF12854.8	PPR_1	830	859	2.30E-10
PF01535.21	PPR	871	899	0.0075
PF01535.21	PPR	906	933	0.0029

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.059
	SRR3591707	mature leaf	0.400
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.052
	SRR3591711	White flower	0.106
	SRR3591712	Green floral bud	0.067
	SRR3591713	Yellow flower	0.034
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.029
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.005
	CRR073320	Tawny withering 3	0.000