Gene detail

Detail information of GWHGAAZE001734

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI22085.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q8H1U4\|APC5_ARATH	Anaphase-promoting complex subunit 5
trEMBL	tr\|V4VDA7\|V4VDA7_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR50369.1}
TAIR10	AT1G06590.1	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	59152791	59167238	+
GWHAAZE00000001	mRNA	59152791	59167238	+
GWHAAZE00000001	exon	59152791	59153026	+
GWHAAZE00000001	exon	59153113	59153191	+
GWHAAZE00000001	exon	59153305	59153390	+
GWHAAZE00000001	exon	59153518	59153650	+
GWHAAZE00000001	exon	59153776	59153808	+
GWHAAZE00000001	exon	59154288	59154536	+
GWHAAZE00000001	exon	59156793	59156870	+
GWHAAZE00000001	exon	59156981	59157243	+
GWHAAZE00000001	exon	59159302	59159388	+
GWHAAZE00000001	exon	59160700	59160759	+
GWHAAZE00000001	exon	59160877	59160944	+
GWHAAZE00000001	exon	59162258	59162363	+
GWHAAZE00000001	exon	59162474	59162615	+
GWHAAZE00000001	exon	59163998	59164096	+
GWHAAZE00000001	exon	59164746	59165010	+
GWHAAZE00000001	exon	59165782	59165849	+
GWHAAZE00000001	exon	59167074	59167238	+
GWHAAZE00000001	CDS	59152791	59153026	+
GWHAAZE00000001	CDS	59153113	59153191	+
GWHAAZE00000001	CDS	59153305	59153390	+
GWHAAZE00000001	CDS	59153518	59153650	+
GWHAAZE00000001	CDS	59153776	59153808	+
GWHAAZE00000001	CDS	59154288	59154536	+
GWHAAZE00000001	CDS	59156793	59156870	+
GWHAAZE00000001	CDS	59156981	59157243	+
GWHAAZE00000001	CDS	59159302	59159388	+
GWHAAZE00000001	CDS	59160700	59160759	+
GWHAAZE00000001	CDS	59160877	59160944	+
GWHAAZE00000001	CDS	59162258	59162363	+
GWHAAZE00000001	CDS	59162474	59162615	+
GWHAAZE00000001	CDS	59163998	59164096	+
GWHAAZE00000001	CDS	59164746	59165010	+
GWHAAZE00000001	CDS	59165782	59165849	+
GWHAAZE00000001	CDS	59167074	59167238	+

Transcript Sequence
>GWHTAAZE001738 ATGAGTTGGCGAGTAGTTACCAATTTTGGTTTGATAGAAAAACTAGTTATGCATGCAGATATCGACGTTTCTGCTCGCCCGAAACACAAAAATGTTGATAAAACTAGAGAAATTGGCCCATTTATGAACCTTTCAAATGATTCATTACGAGGCGTCGATCACAATGGTGGGATTTTCCTGCGTACAAATTGGCAGATACAAGGATATTTACTGGAGCAAGCTGATGCAATTGAAAAGCATGGCAGCTCTTTTCCTCTGAATGCTTTTGAATCTATTTTAAAGCAACTTCAGAAACTGGCACCAGATTTACATCGTGTTCACTTCCTGCGTTATTTGAATAGCCTTTATCATGATGATTATCCTGCTGCCTTGGAAAATCTTCACCGTTACTTTGATTATAGTGCAGGGATTGAAGGATTTGATTTTGTTCCCCCTTCCTCATCTGGCTGCAATAGCTTTGGAAGATATGAAATTGCTTTATTATGTTTAGGGATGATGCATTTTCACTTTGGGCACCCTAAGCAAGCTTTGGAGGTTTTAACTGAGGCAGTTCGGGTTTCTCAACAGCACAGCGACGATACTTGCCTTGCATACACATTGACAGCCATTTGCAACCTGTTGTCTGATATTGGTATCTCGAACACAACTGGAATTATTGGATCATCATACTCACCTGTGACCAGTATTGGCACTTCATTATCTGTTCAGCAACAATTATTTGTGCTCTTGAGAAGGTCCTTGAAGAGAGCTGAATGTCTAAAGCTAAAGCGGCTTGTGGCTTCTAATCATCTTGCAATGGCTAAATTTGATTTAACGCATGTCCAGAGACCGTTGCTATCGTTTGGTCCTAAGGCTTCAATGATGCTTAAAACTTGCCCGCCTGGTGTTTGCAAGGAACTAAGATCTAGTTCTCATTTGATTTGTGAATTTAGCACTGAAAGTTCAACAGCGACTACAGATGGTGCTTTGAGTACTGCATGGCTTAAGAATTTGAAGAAACCAATGGGTTCGTTGGTTTTCTCTCAAGAAAATGGATCTCAAAATCCCTCTCATTCTTTCCAATTCTGTGCACAACCAAGTTCTATTCCTGGGTCTGTGCAGCAGTTAGTGGGTTCTTCATACCTGGTTCGTGCCACCGCATGGGAGATGTATGGCAGTTCGATTAGAGCTGGCAATGGTTGGGTGCCGTCGTGTTCCAGATTTCAATGGGTGTGCATGGGTCGTGTATTGCGGGTTCTTGTTGGTGCTTCTCTTGCTCGAATAAATGCGCTGATTTTTGCAACATGCTTCAGTGACTCATCGAGTTCAGCTGATGTTGCGTTAGCATATGCCAAGCTTGTCCAACATTTGGCGGTGTTTAAAGGATACAAAGAAGCCTTAGCTGCTCTTAAAGTAGCAGAAGAGAAGTTTTTGTCTATCTCGAAGTCACGAATCCTGTTAATTAAACTGCAGCTTCTCCATGAGCAAGCTTTACACAGGGGGCATTTGAAACTTGCTCAACAATTATGTGATGAGCTTGGAGTTTTGGCATCTTCTGTAACTGGTGTGGACACAGAGCTGAAGACAGAAGCAAGCCTTCGCCATGCTCGGACTTTGCTTGCTGCTAACCAGTTTAGTGAGGCTGCAGCTGTAGCACACTCTCTGTTCTGCATGTGTTACAAATTCAGTCTACAGGTTGAGAATGCCACTGTTCTCCTCTTGCTTGCAGAGATCCACAAGAGATCTGGCAATGCTGTTTTAGGAATTCCCTATGCTTTGGCAAGCCTTTCATTTTGTCAATCGTTTAACTTGGATCTTCTCAAATCATCGGCCACTCTAACTCTGGCAGAATTGTGGCTCTCACTTGGATCAAGTCATGCAAAAAGGGCTTTGACCCTTATACATGGTGCTTTCCCTATGATTCTTGGTCATGGGGGTCTGGAGCTTTGTGCTCGGGCGTATATTGCAGAAGCAAAATGTTACCTATCAGACCCAAGCTTTTCAGTTTCTGAAGATCCCGAGGCTGTGCTGGATCCTTTAATGCAGGCTTCTGAAGAGCTTGAAGCTTTGGAGTATCATGAAATGGCCGCCGAAGCTTACTACTTGATGGCTATTGTATTCGACAAGCTGGGGCGGTTAGATGAAAGGGAAGAAGCTGCAACTTCATTTAAGCTACACACTTTAACTCTTCAAAATCCAACAGAAGAGGAAGAAGATCCTTTCCTACCTATGTTGTAA

Network for GWHGAAZE001734

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12862.8	ANAPC5	107	208	1.20E-26
PF01743.21	PolyA_pol	41	74	2.30E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03352	APC5	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		IL-17 signaling pathway	map04657
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0005515	molecular_function	protein binding
GO:0003723	molecular_function	RNA binding
GO:0016779	molecular_function	nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.253
	SRR3591706	second leaf	4.024
	SRR3591707	mature leaf	2.131
	SRR3591708	Shoot apex	14.105
	SRR3591709	Stem	5.865
	SRR3591710	White floral bud	4.514
	SRR3591711	White flower	4.862
	SRR3591712	Green floral bud	8.303
	SRR3591713	Yellow flower	5.049
SRP173429	SRR8316895	Juvenile bud stage	5.946
	SRR8316896	Juvenile bud stage	8.971
	SRR8316897	Juvenile bud stage	4.664
	SRR8316894	Third green stage	3.466
	SRR8316900	Third green stage	8.472
	SRR8316901	Third green stage	9.475
	SRR8316898	Complete white stage	1.656
	SRR8316899	Complete white stage	8.241
	SRR8316903	Complete white stage	4.036
	SRR8316902	Silver flowering stage	1.981
	SRR8316904	Silver flowering stage	2.495
	SRR8316905	Silver flowering stage	1.135
	SRR8316906	Gold flowering stage	3.642
	SRR8316907	Gold flowering stage	3.487
	SRR8316908	Gold flowering stage	4.033
SRP132670	SRR6706286	Control	7.461
	SRR6706287	Light intensity 50%	7.778
	SRR6706288	Light intensity 20%	7.744
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.424
	CNS0095593	Slightly white alabastrum(diploid) 2	7.125
	CNS0095594	Slightly white alabastrum(diploid) 3	7.542
	CNS0095595	Whole white alabastrum(diploid) 2	6.657
	CNS0095596	Whole white alabastrum(diploid) 3	6.104
	CNS0095597	Whole white alabastrum(diploid) 4	6.429
	CNS0095598	Silvery flower (diploied) 1	5.643
	CNS0095599	Silvery flower (diploied) 2	5.046
	CNS0095600	Silvery flower (diploied) 3	7.144
	CNS0095601	Golden flower (diploid) 1	3.973
	CNS0095602	Golden flower (diploid) 2	4.879
	CNS0095603	Golden flower (diploid) 3	5.258
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.089
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.174
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.783
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.244
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.654
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.924
	CNS0095610	Silvery flower (tetraploid) 1	4.996
	CNS0095611	Silvery flower (tetraploid) 2	6.172
	CNS0095612	Silvery flower (tetraploid) 3	9.468
	CNS0095613	Golden flower (tetraploid) 1	2.408
	CNS0095614	Golden flower (tetraploid) 2	4.472
	CNS0095615	Golden flower (tetraploid) 3	2.216
CRA001975	CRR073297	Stem 1	13.815
	CRR073298	Stem 2	11.454
	CRR073299	Stem 3	13.731
	CRR073300	Leaf 1	12.501
	CRR073301	Leaf 2	12.833
	CRR073302	Leaf 3	10.922
	CRR073303	Juvenile bud 1	10.061
	CRR073304	Juvenile bud 2	6.858
	CRR073305	Juvenile bud 3	10.933
	CRR073306	Third green 1	4.051
	CRR073307	Third green 2	3.732
	CRR073308	Third green 3	4.307
	CRR073309	Second white 1	4.356
	CRR073310	Second white 2	5.751
	CRR073311	Second white 3	3.936
	CRR073312	Silver flowering 1	4.313
	CRR073313	Silver flowering 2	4.816
	CRR073314	Silver flowering 3	2.746
	CRR073315	Gold flowering 1	4.700
	CRR073316	Gold flowering 2	10.580
	CRR073317	Gold flowering 3	4.146
	CRR073318	Tawny withering 1	13.873
	CRR073319	Tawny withering 2	10.011
	CRR073320	Tawny withering 3	13.247