Gene detail

Detail information of GWHGAAZE001742

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082970.1	1.42796E-50	PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	4E-19	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	4E-47	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	1E-17	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	59292455	59293405	-
GWHAAZE00000001	mRNA	59292455	59293405	-
GWHAAZE00000001	exon	59292455	59293405	-
GWHAAZE00000001	CDS	59292455	59293405	-

Transcript Sequence
>GWHTAAZE001746 ATGAGTGCAGATAATTGGACAGAACAGTACACTTTACACTGCGATAATGATACATTTGATGCGTTTGCTAAATTTGATTTCCCATTTAGCAAAGGAAAGCGTTACTTTATTTTAGTTGGTATTTGTAATGGATTGATATGCTTGTCTGGTGATCAGGGGACTAACACCAGCATCATAACCTTATGGAATCCCTCTATTCGAAAATCAATCACCCTTCCAAAGCCCAACGTCCCATGCAAGTCACCTGGCCGTTTGTGCAATTGTCTTGGATTTGGAATTGACCCTGTAACCGCTGACTACAAGATTATCAGACTTGCCTATCATTTTTATGATTGGCGGCTCCTAGTACCGCCAGATGCAGAGCTTTTCAAGCTTAGCTCCGGCTCTTGGAGAAACATTGATGTTGGGGACTTTCCCTGTGTTACTTTTCTTCATGATCAACAGGCTGTTTTGAATGGTGTCATCCATTGGACTGGATCTATTTGGAACAAGGATAGTGGTAGTAGATGTTTCGTCATTGTGTCATTCGACATGAGAAACGACTCGCTAGGGGTTATAAACGCGCCACCTTGTGGAGCACCGAATTTGAGCCAGAACATTGTCACAGTATTTGGAGAATCACTTTCTCTTTCACATCCTCATGGAGATCATTCTTGGTGCATATGGGTGATGATGGAGTATGGCATAGAAAGCTCTTGGACAAAGCTGTTCACTATTGATTTTGGATGCATACCAATTTGCTTTAGAGAGAATGGTGATATCATATTGGAGAGAAGAACCTTGACTTGTGAACGGGAGTTGATTTCCTATAATTTTGAAATTAAACTAATCAAGAATCTCATAATACAGGGAACATCGTGCTCATTTGACGTAGATGCTTACAAGGAGAGCCTTGTCTTAGCTAACCTCTCGGCAAAAGGAGACTTTGGATGCAAGAAATCAATTCCATAG

Network for GWHGAAZE001742

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07734.14	FBA_1	150	250	3.20E-06
PF00270.30	DEAD	2	107	1.80E-19
PF00271.32	Helicase_C	170	277	1.00E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12812	DDX39B, UAP56, SUB2	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.797
	SRR3591706	second leaf	1.462
	SRR3591707	mature leaf	2.584
	SRR3591708	Shoot apex	2.441
	SRR3591709	Stem	2.212
	SRR3591710	White floral bud	2.515
	SRR3591711	White flower	2.506
	SRR3591712	Green floral bud	4.026
	SRR3591713	Yellow flower	2.334
SRP173429	SRR8316895	Juvenile bud stage	1.130
	SRR8316896	Juvenile bud stage	1.639
	SRR8316897	Juvenile bud stage	0.498
	SRR8316894	Third green stage	0.443
	SRR8316900	Third green stage	2.783
	SRR8316901	Third green stage	1.646
	SRR8316898	Complete white stage	1.226
	SRR8316899	Complete white stage	2.957
	SRR8316903	Complete white stage	1.493
	SRR8316902	Silver flowering stage	0.660
	SRR8316904	Silver flowering stage	1.006
	SRR8316905	Silver flowering stage	0.548
	SRR8316906	Gold flowering stage	1.389
	SRR8316907	Gold flowering stage	0.463
	SRR8316908	Gold flowering stage	2.031
SRP132670	SRR6706286	Control	1.727
	SRR6706287	Light intensity 50%	2.018
	SRR6706288	Light intensity 20%	2.138
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.547
	CNS0095593	Slightly white alabastrum(diploid) 2	1.663
	CNS0095594	Slightly white alabastrum(diploid) 3	2.171
	CNS0095595	Whole white alabastrum(diploid) 2	1.506
	CNS0095596	Whole white alabastrum(diploid) 3	1.235
	CNS0095597	Whole white alabastrum(diploid) 4	0.787
	CNS0095598	Silvery flower (diploied) 1	1.142
	CNS0095599	Silvery flower (diploied) 2	1.095
	CNS0095600	Silvery flower (diploied) 3	1.214
	CNS0095601	Golden flower (diploid) 1	0.893
	CNS0095602	Golden flower (diploid) 2	1.113
	CNS0095603	Golden flower (diploid) 3	1.007
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.714
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.938
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.755
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.460
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.757
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.550
	CNS0095610	Silvery flower (tetraploid) 1	1.619
	CNS0095611	Silvery flower (tetraploid) 2	2.732
	CNS0095612	Silvery flower (tetraploid) 3	1.793
	CNS0095613	Golden flower (tetraploid) 1	0.902
	CNS0095614	Golden flower (tetraploid) 2	1.585
	CNS0095615	Golden flower (tetraploid) 3	1.356
CRA001975	CRR073297	Stem 1	1.298
	CRR073298	Stem 2	2.238
	CRR073299	Stem 3	2.277
	CRR073300	Leaf 1	1.508
	CRR073301	Leaf 2	1.372
	CRR073302	Leaf 3	2.094
	CRR073303	Juvenile bud 1	1.249
	CRR073304	Juvenile bud 2	1.475
	CRR073305	Juvenile bud 3	1.183
	CRR073306	Third green 1	0.471
	CRR073307	Third green 2	1.101
	CRR073308	Third green 3	0.805
	CRR073309	Second white 1	1.066
	CRR073310	Second white 2	0.666
	CRR073311	Second white 3	0.289
	CRR073312	Silver flowering 1	0.088
	CRR073313	Silver flowering 2	0.112
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.836
	CRR073316	Gold flowering 2	0.626
	CRR073317	Gold flowering 3	0.285
	CRR073318	Tawny withering 1	2.697
	CRR073319	Tawny withering 2	1.163
	CRR073320	Tawny withering 3	2.119