Gene detail

Detail information of GWHGAAZE001747

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO54045.1	0	hypothetical protein CISIN_1g01470512mg, partial [Citrus sinensis]
Swissprot	tr\|O22227\|MIZ1_ARATH	1E-49	Protein MIZU-KUSSEI 1
trEMBL	tr\|A0A067EJH0\|A0A067EJH0_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO54045.1} (Fragment)
TAIR10	AT5G36230.1	3E-154	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	59493434	59500157	+
GWHAAZE00000001	mRNA	59493434	59500157	+
GWHAAZE00000001	exon	59493434	59493954	+
GWHAAZE00000001	exon	59494512	59494773	+
GWHAAZE00000001	exon	59496020	59496228	+
GWHAAZE00000001	exon	59499500	59500157	+
GWHAAZE00000001	CDS	59493434	59493954	+
GWHAAZE00000001	CDS	59494512	59494773	+
GWHAAZE00000001	CDS	59496020	59496228	+
GWHAAZE00000001	CDS	59499500	59500157	+

Transcript Sequence
>GWHTAAZE001751 ATGAACTGCCCATATGTTCGAATACAGGTTGTCTTTACAGGAGGTCGTACACAACCTGGGACAACTAAACCCGATGAGGGGGAGCGCCACACATATTCTATATTAGACTGTGAGCCTCAACGTGAAGCCATTCTGCCATCTGTAATCTACATACAGAAGATACTGCGTAGAAGGCCCTTTCTCATTAAGAATCTTGAAAATGTTATGCGAAGGTTCCTTCAGTCCCTTGAGCTTTTTGAGGAAAATGAAAGGAAGAAGCTCGGAATTTTCACAGCACTTGCGTTTTCGCAGAAGCTGTCAGGTCTGCCTCCGGAGACCGTGTTCCAGCCGCTTCTCAAGGATAACCTTGTGGGCAAAGGGCTAGTACTCTCGTTCATAACAGAGTTCTTCAAGGAATATCTGATTGATAATAGCCTTGATGATTTGATTTCGATTCTGAAGCGGGGTAAAATGGAGGATAATCTTCTTGAATTCTTCCCATCTGCAAAGCGCTCGGCTGAAGCCTTCTCTGAGCATTTCACCAAAGCTGGGATATTGCCATTGGTTGAATACAACGAGAAGAAGATTTTTGAGGTGAAGCTGAAGGAAATGAAAACGGCATTAACAACTCAGATAGCAGAGGAAACCGATATATCTGAAGTCATAGAGACTGTGAAGCAACATGTTAAAGATGCTAAATTGCCAGACATTGAGGTTGTTCGTATTTTGTGGGATGTGATGATGGATGCTGTTCAATGGTCTGGCAAAAATCAGCAGCAGAATGCTAATGCTGCTCTTCGCCAGGTGAAAACGTGGGCAGAATTACTGAATACTTTCTGCACCAGTGGGAAGCTTGAACTAGAGCTGCTGTACAAAGTTCAGGTCCAATGCTATGAGGATACTAAGCTGATGAAATTATTCCCTGAAATCGTGAGGTCTTTATATGACCAGGATGTGCTTGCTGAAGATACCATTCTTCACTGGTTCCGTAAAGGAACAAACCCTAAGGGCAGGCCTCAAGTCGCCCTTCAACAACCATCAAACAAGAAAACTACTCCATCGAAATCATCCAAAATCCTTTGCCGTTTCAAGTCAGTATTCCGGTCATTCCCCATCATAACTCCAGCAGCCTGCAAGTTCCCGGTCCACCTCCACCTCCCGGATCACGGTCACATCCGTGGTGGGACCCGCATGACCGGAACCCTATACGGCCACAAAAAGTCTAGGATCAACCTAGCCCTGCAAGAGAAACCTAAGTGCCTACCCATGCTTGTGCTGGAGCTCTCCACCACCACATCAAAACTCCTCCAAGACGTGGGCTCAGGGCTTGTAAGGATTGCGTTGGAATGTGAGAAGAACCCGTCCCCTTCGGAGAAGAAGAGGCTTGTGGATGAGCCTTTGTGGACTATGTATTGCAACGGAAGGAAAATGGGGTACGGGGTTAGGAGAGAGGCGACCGAGCACGACCTACGCGTCATGCAAATGCTACACGCGGTGTCTATGGGTGCCGGTGTTCTTCCTACTGATGACGACGCTTCTGAAGGCGAGTTGACTTACATGCGCGCCTATTTTGAGCGTGTTGTTGGGTCTAGGGATTCTGAAACATACTATATGATAAATCCTGATGGCAACACAGGTCCTGAACTTACAATCTTTTTCGTCAGGATCTGA

Network for GWHGAAZE001747

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02020.19	W2	279	329	8.90E-11
PF04759.14	DUF617	391	548	6.60E-68
PF00249.32	Myb_DNA-binding	15	62	1.10E-12
PF00249.32	Myb_DNA-binding	68	113	1.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0010274	biological_process	hydrotropism
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.995
	SRR3591706	second leaf	19.650
	SRR3591707	mature leaf	26.381
	SRR3591708	Shoot apex	38.334
	SRR3591709	Stem	56.734
	SRR3591710	White floral bud	84.391
	SRR3591711	White flower	91.703
	SRR3591712	Green floral bud	78.804
	SRR3591713	Yellow flower	88.370
SRP173429	SRR8316895	Juvenile bud stage	56.722
	SRR8316896	Juvenile bud stage	86.012
	SRR8316897	Juvenile bud stage	61.996
	SRR8316894	Third green stage	39.258
	SRR8316900	Third green stage	123.310
	SRR8316901	Third green stage	119.638
	SRR8316898	Complete white stage	79.912
	SRR8316899	Complete white stage	192.263
	SRR8316903	Complete white stage	104.233
	SRR8316902	Silver flowering stage	76.117
	SRR8316904	Silver flowering stage	100.570
	SRR8316905	Silver flowering stage	50.344
	SRR8316906	Gold flowering stage	148.226
	SRR8316907	Gold flowering stage	146.522
	SRR8316908	Gold flowering stage	191.069
SRP132670	SRR6706286	Control	110.359
	SRR6706287	Light intensity 50%	112.430
	SRR6706288	Light intensity 20%	126.119
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	77.374
	CNS0095593	Slightly white alabastrum(diploid) 2	86.573
	CNS0095594	Slightly white alabastrum(diploid) 3	78.167
	CNS0095595	Whole white alabastrum(diploid) 2	100.773
	CNS0095596	Whole white alabastrum(diploid) 3	115.093
	CNS0095597	Whole white alabastrum(diploid) 4	116.144
	CNS0095598	Silvery flower (diploied) 1	72.811
	CNS0095599	Silvery flower (diploied) 2	69.434
	CNS0095600	Silvery flower (diploied) 3	166.868
	CNS0095601	Golden flower (diploid) 1	87.198
	CNS0095602	Golden flower (diploid) 2	131.638
	CNS0095603	Golden flower (diploid) 3	128.625
	CNS0095604	Slightly white alabastrum(tetraploid) 1	164.041
	CNS0095605	Slightly white alabastrum(tetraploid) 2	156.692
	CNS0095606	Slightly white alabastrum(tetraploid) 3	141.468
	CNS0095607	Whole white alabastrum(tetraploid) 1	176.853
	CNS0095608	Whole white alabastrum(tetraploid) 2	186.629
	CNS0095609	Whole white alabastrum(tetraploid) 3	170.654
	CNS0095610	Silvery flower (tetraploid) 1	191.809
	CNS0095611	Silvery flower (tetraploid) 2	250.427
	CNS0095612	Silvery flower (tetraploid) 3	222.702
	CNS0095613	Golden flower (tetraploid) 1	169.932
	CNS0095614	Golden flower (tetraploid) 2	174.293
	CNS0095615	Golden flower (tetraploid) 3	232.521
CRA001975	CRR073297	Stem 1	77.598
	CRR073298	Stem 2	76.225
	CRR073299	Stem 3	88.280
	CRR073300	Leaf 1	98.542
	CRR073301	Leaf 2	89.864
	CRR073302	Leaf 3	110.186
	CRR073303	Juvenile bud 1	112.636
	CRR073304	Juvenile bud 2	105.952
	CRR073305	Juvenile bud 3	104.633
	CRR073306	Third green 1	103.366
	CRR073307	Third green 2	110.603
	CRR073308	Third green 3	95.477
	CRR073309	Second white 1	141.318
	CRR073310	Second white 2	117.838
	CRR073311	Second white 3	100.875
	CRR073312	Silver flowering 1	97.240
	CRR073313	Silver flowering 2	93.099
	CRR073314	Silver flowering 3	87.259
	CRR073315	Gold flowering 1	68.511
	CRR073316	Gold flowering 2	73.403
	CRR073317	Gold flowering 3	73.011
	CRR073318	Tawny withering 1	92.523
	CRR073319	Tawny withering 2	73.812
	CRR073320	Tawny withering 3	83.107