Detail information of GWHGAAZE001752


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011098049.12.0211E-62PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprottr|Q9SFC7|FB135_ARATH1E-18F-box protein At3g07870
trEMBLtr|A0A022QS53|A0A022QS53_ERYGU6E-58Uncharacterized protein {ECO:0000313|EMBL:EYU30756.1}
TAIR10AT3G06240.15E-18F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene5963139059632598-
GWHAAZE00000001mRNA5963139059632598-
GWHAAZE00000001exon5963139059632598-
GWHAAZE00000001CDS5963139059632598-
Transcript Sequence

Network for GWHGAAZE001752

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box6414.50E-10
PF07734.14FBA_12073212.90E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.752
SRR3591706second leaf4.539
SRR3591707mature leaf2.830
SRR3591708Shoot apex9.770
SRR3591709Stem8.661
SRR3591710White floral bud2.164
SRR3591711White flower1.971
SRR3591712Green floral bud3.661
SRR3591713Yellow flower1.061
SRP173429 SRR8316895Juvenile bud stage 1.134
SRR8316896Juvenile bud stage 2.104
SRR8316897Juvenile bud stage 0.173
SRR8316894Third green stage 1.340
SRR8316900Third green stage 3.678
SRR8316901Third green stage 2.093
SRR8316898Complete white stage 0.299
SRR8316899Complete white stage 3.200
SRR8316903Complete white stage 0.793
SRR8316902Silver flowering stage0.431
SRR8316904Silver flowering stage0.219
SRR8316905Silver flowering stage0.188
SRR8316906Gold flowering stage 0.179
SRR8316907Gold flowering stage 0.577
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.478
SRR6706287Light intensity 50%1.133
SRR6706288Light intensity 20%1.506
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.626
CNS0095593Slightly white alabastrum(diploid) 23.001
CNS0095594Slightly white alabastrum(diploid) 32.240
CNS0095595Whole white alabastrum(diploid) 21.535
CNS0095596Whole white alabastrum(diploid) 32.315
CNS0095597Whole white alabastrum(diploid) 41.996
CNS0095598Silvery flower (diploied) 10.737
CNS0095599Silvery flower (diploied) 21.262
CNS0095600Silvery flower (diploied) 31.752
CNS0095601Golden flower (diploid) 11.163
CNS0095602Golden flower (diploid) 21.285
CNS0095603Golden flower (diploid) 31.612
CNS0095604Slightly white alabastrum(tetraploid) 14.379
CNS0095605Slightly white alabastrum(tetraploid) 23.120
CNS0095606Slightly white alabastrum(tetraploid) 38.125
CNS0095607Whole white alabastrum(tetraploid) 12.541
CNS0095608Whole white alabastrum(tetraploid) 21.288
CNS0095609Whole white alabastrum(tetraploid) 32.909
CNS0095610Silvery flower (tetraploid) 13.011
CNS0095611Silvery flower (tetraploid) 23.189
CNS0095612Silvery flower (tetraploid) 31.070
CNS0095613Golden flower (tetraploid) 11.091
CNS0095614Golden flower (tetraploid) 21.834
CNS0095615Golden flower (tetraploid) 30.692
CRA001975CRR073297Stem 11.123
CRR073298Stem 21.769
CRR073299Stem 31.939
CRR073300Leaf 11.839
CRR073301Leaf 21.712
CRR073302Leaf 31.024
CRR073303Juvenile bud 11.083
CRR073304Juvenile bud 20.529
CRR073305Juvenile bud 30.982
CRR073306Third green 10.295
CRR073307Third green 20.203
CRR073308Third green 30.098
CRR073309Second white 10.144
CRR073310Second white 20.116
CRR073311Second white 30.177
CRR073312Silver flowering 10.046
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.961
CRR073316Gold flowering 21.188
CRR073317Gold flowering 30.629
CRR073318Tawny withering 14.095
CRR073319Tawny withering 23.925
CRR073320Tawny withering 35.803