Gene detail

Detail information of GWHGAAZE001754

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011098049.1	2.90295E-37	PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprot	tr\|Q9SUY0\|FB244_ARATH	2E-10	F-box protein At4g22390
trEMBL	tr\|A0A022QS53\|A0A022QS53_ERYGU	9E-37	Uncharacterized protein {ECO:0000313\|EMBL:EYU30756.1}
TAIR10	AT4G22390.1	7E-10	F-box associated ubiquitination effector family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	59771261	59772477	-
GWHAAZE00000001	mRNA	59771261	59772477	-
GWHAAZE00000001	exon	59772393	59772477	-
GWHAAZE00000001	exon	59771261	59772120	-
GWHAAZE00000001	CDS	59772393	59772477	-
GWHAAZE00000001	CDS	59771261	59772120	-

Transcript Sequence
>GWHTAAZE001758 ATGTCTGACTATATTCCTACTGAAATCATAGTTAATATCCTCTCCTGGCTGCCTCCGAGGTCTCTTCTTCGATTCAGGTGCGTATGTCTATGGAATCCTTCCATTAGAAGAAAACTGGTTCTCGGCGAGTCCCTATTGGGGTTCGACGCGAAACGTAGCTATTTTAGTGCATTGGGTTTTAATCCAAAAACTAATGATTACAAGGTTGTCAATATTGGATATGAACGAATGGGCGATGGATCCCATTGTAGTGAAGTTAGGGTTTATTCAGTTAAGGAGGGGTCTTGGAGGCGCATTAGTGCCCCTGCTCTTGCCTATGACATTGTCCGTACCATGTCTTCGAATGTTGTTATTAATGGATCTCTGTACTGGATTGCTAACCACGGGGTCTCGAGGACTTCTGACTTCCGGGCGATTAGTCCGCGTAATTTGTTTGATACAGTTGACGATATAGCGATTAATTCAATTACGGTGTTTGATACAGTTGAAGAGGTATTTCGCATGATAATGTTGCCGAAAAGTTTAGTGTCCGCAGTAACTCCTAACTTGCGTCTCATGGTAATTGGGGGTTCACTTTCAGTCATTCAATGTGAAAAATTTCTCATCCTTCGTTCCATTTGGGTGATGAAAAAAGATGGCGATGTAGAGTCGTGGAGTGAAAAATATAGTTTTGATTCTGACTTGGGTTTTAGGAAGATGTTGGGTTTTAGGGAGAATGGCGAACTGGTGTTGTCGAATAAAGATGATGATCTGGTAGCTTATAACCCAATAACCCGACAAAGCACGAACATTATGGCTGGCGGCCATAATAACTTATATTATGGCACCATCTACAAGCAGAGCTTAGGATTACTCCTCGAAGGAGAACAGATTTCAGAAAAACAAACAAGTGACATCGAACCTATTTCATCAGAGAGGAGGACTGAAGCGTGGATCAGTTTATGA

Network for GWHGAAZE001754

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0022

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	29	5.90E-06
PF07734.14	FBA_1	116	227	1.60E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.057
	SRR3591706	second leaf	1.261
	SRR3591707	mature leaf	2.081
	SRR3591708	Shoot apex	3.538
	SRR3591709	Stem	0.962
	SRR3591710	White floral bud	2.041
	SRR3591711	White flower	2.949
	SRR3591712	Green floral bud	3.900
	SRR3591713	Yellow flower	1.142
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.049
	SRR8316897	Juvenile bud stage	1.266
	SRR8316894	Third green stage	0.072
	SRR8316900	Third green stage	0.016
	SRR8316901	Third green stage	0.012
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.053
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.002
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.163
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.166
	CNS0095603	Golden flower (diploid) 3	0.046
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.469
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.304
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.015
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.334
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.316
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.107
	CNS0095610	Silvery flower (tetraploid) 1	0.942
	CNS0095611	Silvery flower (tetraploid) 2	4.137
	CNS0095612	Silvery flower (tetraploid) 3	0.892
	CNS0095613	Golden flower (tetraploid) 1	0.296
	CNS0095614	Golden flower (tetraploid) 2	1.339
	CNS0095615	Golden flower (tetraploid) 3	0.515
CRA001975	CRR073297	Stem 1	0.018
	CRR073298	Stem 2	0.009
	CRR073299	Stem 3	0.030
	CRR073300	Leaf 1	0.003
	CRR073301	Leaf 2	0.068
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.004
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.025
	CRR073311	Second white 3	0.006
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000