Gene detail

Detail information of GWHGAAZE001755

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU30756.1	1.26283E-64	hypothetical protein MIMGU_mgv1a018041mg [Erythranthe guttata]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	3E-17	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A022QS53\|A0A022QS53_ERYGU	5E-65	Uncharacterized protein {ECO:0000313\|EMBL:EYU30756.1}
TAIR10	AT3G06240.1	3E-16	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	59777150	59778367	-
GWHAAZE00000001	mRNA	59777150	59778367	-
GWHAAZE00000001	exon	59777150	59778367	-
GWHAAZE00000001	CDS	59777150	59778367	-

Transcript Sequence
>GWHTAAZE001759 ATGTCTGACTATATTCCTACTGAAATCATAGTTAATATCCTCTCATGCCTACCTCCAAGGTCTCTTCTTCGATTCAGGTGCGTTTGTAAATCATGGTGTTCTCTAATTTCAAGCCCTAATTTCAACGACCTTCACACTCACCAACTCGATGATTCTTCGAATCACAACACTCGCATACTTGCCCTGCGCTTGACTGGCCGTGTAAGTTACGGTAGCAAAGTCTATCCTCTCGATTTCAATAGCGAAATATTAAGCGTAGACGACGAGAGTGTCGGAATTGATTGTCCATTTGCCATTCCAGCACAGTGGTGCAGCACTTCTTGTAATGGCTTGTTTCTTGTTTGTTGTTCCGTCTTTCAAGGTCTATGGAATCCTTCCATTAGAAGAAAACTGGTTCTCGGCGAGTCCCTATTCGGGGTCGTGTCAAAACGTAGGTATGTTAGTGCGTTGGGGTTTAATCCAAAAACTAATGATTACAAGATTGTCAATATTGGATATGAACGAATGCGCAGTGGATCCCATTGTAATGAAGTTAGGGTTTATTCAGTTAAGGAGGGGGCTTGGAGGCGCATTAGTGCCCCTGCTCCTCCCTATGATATTGTCTGCAGCATGCCTTTGAATGTTGTTATTAATGGATCTGTGTACTGGATTGCTAACCACAGTGTCTCGGGGACTTCTGACTTTCGGGCGATTGGTCCACGTAATTTGTTTGATACAGCTGACGATCTAGTGATTAATTCAATTATGGTGTTTGATACAGTTGAAGAGGTATTTCGCGTGATAATGTTGCCGAAAAGTTTAGTGTCCACAGTAACTCACGACTTGTGTCTCATGGTAATTGGGGGTTCACTTTCAGTCATTCAATATGAAGAATTTCTCAACCTTCGTTCCATTTGGGTGATGAAAAAAGATGGTGAGGTAGAGTCGTGGAGTGAAAAATATAGTTTTGATCCTGACTTGGGTTTTGGGAGGATGTTGGGTTTTAGGGAGAATGGTGAACTGGTATTGTTGAATAAAGATGATGATCTGATAGCTTATAACCCAATTACCCGACAAAGCACAAACCTTACGGCTGGCGGCCATAATAACTTATATTATGGGGCTATCTACAAGGAGAGCTTAGGATTACTCCTTGAAGGAGAACAGATTTCAGCAAGGCAAACATGTGACGTCGAACCTATTTCCGGAGAGGAGACTGAAGCGTGGATCAGTTTATGA

Network for GWHGAAZE001755

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	42	2.00E-10
PF08268.13	FBA_3	208	315	1.40E-07
PF05008.16	V-SNARE	9	66	5.20E-17
PF12352.9	V-SNARE_C	79	144	4.10E-23

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K08493	VTI1	SNARE interactions in vesicular transport	map04130
K08493	VTI1	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0016020	cellular_component	membrane
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.288
	SRR3591706	second leaf	11.057
	SRR3591707	mature leaf	19.531
	SRR3591708	Shoot apex	10.742
	SRR3591709	Stem	11.866
	SRR3591710	White floral bud	6.199
	SRR3591711	White flower	6.865
	SRR3591712	Green floral bud	6.210
	SRR3591713	Yellow flower	4.548
SRP173429	SRR8316895	Juvenile bud stage	6.049
	SRR8316896	Juvenile bud stage	7.393
	SRR8316897	Juvenile bud stage	3.947
	SRR8316894	Third green stage	3.524
	SRR8316900	Third green stage	9.056
	SRR8316901	Third green stage	8.094
	SRR8316898	Complete white stage	4.937
	SRR8316899	Complete white stage	13.898
	SRR8316903	Complete white stage	7.118
	SRR8316902	Silver flowering stage	3.733
	SRR8316904	Silver flowering stage	6.688
	SRR8316905	Silver flowering stage	3.758
	SRR8316906	Gold flowering stage	8.619
	SRR8316907	Gold flowering stage	6.414
	SRR8316908	Gold flowering stage	8.697
SRP132670	SRR6706286	Control	9.003
	SRR6706287	Light intensity 50%	8.630
	SRR6706288	Light intensity 20%	8.770
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.926
	CNS0095593	Slightly white alabastrum(diploid) 2	3.443
	CNS0095594	Slightly white alabastrum(diploid) 3	3.773
	CNS0095595	Whole white alabastrum(diploid) 2	3.506
	CNS0095596	Whole white alabastrum(diploid) 3	3.080
	CNS0095597	Whole white alabastrum(diploid) 4	3.748
	CNS0095598	Silvery flower (diploied) 1	7.061
	CNS0095599	Silvery flower (diploied) 2	5.371
	CNS0095600	Silvery flower (diploied) 3	11.078
	CNS0095601	Golden flower (diploid) 1	8.723
	CNS0095602	Golden flower (diploid) 2	12.838
	CNS0095603	Golden flower (diploid) 3	12.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.104
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.325
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.895
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.222
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.458
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.032
	CNS0095610	Silvery flower (tetraploid) 1	16.269
	CNS0095611	Silvery flower (tetraploid) 2	22.658
	CNS0095612	Silvery flower (tetraploid) 3	12.795
	CNS0095613	Golden flower (tetraploid) 1	6.730
	CNS0095614	Golden flower (tetraploid) 2	16.146
	CNS0095615	Golden flower (tetraploid) 3	9.739
CRA001975	CRR073297	Stem 1	11.733
	CRR073298	Stem 2	12.581
	CRR073299	Stem 3	9.191
	CRR073300	Leaf 1	9.255
	CRR073301	Leaf 2	10.004
	CRR073302	Leaf 3	5.074
	CRR073303	Juvenile bud 1	8.428
	CRR073304	Juvenile bud 2	5.760
	CRR073305	Juvenile bud 3	7.796
	CRR073306	Third green 1	2.058
	CRR073307	Third green 2	1.707
	CRR073308	Third green 3	2.460
	CRR073309	Second white 1	3.026
	CRR073310	Second white 2	1.237
	CRR073311	Second white 3	1.339
	CRR073312	Silver flowering 1	0.435
	CRR073313	Silver flowering 2	1.004
	CRR073314	Silver flowering 3	0.258
	CRR073315	Gold flowering 1	11.185
	CRR073316	Gold flowering 2	16.543
	CRR073317	Gold flowering 3	16.008
	CRR073318	Tawny withering 1	4.445
	CRR073319	Tawny withering 2	3.081
	CRR073320	Tawny withering 3	5.404