Gene detail

Detail information of GWHGAAZE001778

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007048877.1	Kinase superfamily protein [Theobroma cacao]
Swissprot	tr\|Q9SJG2\|Y2296_ARATH	Probable receptor-like protein kinase At2g42960
trEMBL	tr\|A0A061DJX9\|A0A061DJX9_THECC	Kinase superfamily protein {ECO:0000313\|EMBL:EOX93034.1}
TAIR10	AT3G59110.1	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	60512045	60517372	-
GWHAAZE00000001	mRNA	60512045	60517372	-
GWHAAZE00000001	exon	60512045	60512203	-
GWHAAZE00000001	exon	60513392	60513601	-
GWHAAZE00000001	exon	60514489	60514618	-
GWHAAZE00000001	exon	60514718	60514888	-
GWHAAZE00000001	exon	60515356	60515478	-
GWHAAZE00000001	exon	60516497	60516594	-
GWHAAZE00000001	exon	60516740	60517372	-
GWHAAZE00000001	CDS	60516740	60517372	-
GWHAAZE00000001	CDS	60516497	60516594	-
GWHAAZE00000001	CDS	60515356	60515478	-
GWHAAZE00000001	CDS	60514718	60514888	-
GWHAAZE00000001	CDS	60514489	60514618	-
GWHAAZE00000001	CDS	60513392	60513601	-
GWHAAZE00000001	CDS	60512045	60512203	-

Transcript Sequence
>GWHTAAZE001782 ATGCCGTCTGAGAGTCTTAATGCAGAGTTATCCAAGAAGACATTGATTTTGGGATTAAAGCTATGGGTTGTGATTGGAATATGCGTAGGCGCATTCATAGTGTTGATTCTAAGTATCTTATCCATATGGGCCACATTTCGGAGAAAATCAAGAAGAACTGTAGACAAGTACTCCCTTTCTCAAATACCCAATATCTCAAAAGACATCAAGGTGGACAGAATCACAGGTCAAAATTTCCATGACCATCAAGAAAGTATGTACGTGACGGTTAATGACAAATCAAGTGATAAAAACTCGGAGAAAATGTCAGCCGATCACTTGGGAAGGAGCAAATCTAGTGAAGTTGATAATGTAAGCCAATGTAGCTCTATGTACCATCACGAGAGGGCTTGTAGTTCACAGTCAGGGGAGGAAGGGAGTTCAGGGACTGTGAGGAAGCAATCTTCGTTGTCTTACGGACTTGCAATGCCGTCTCCTTTAGTGGGATTACCCGAAATGTCACATCTTGGGTGGGGCCACTGGTTTACTCTTAGAGATCTTCAGCTTGCGACTAACCGTTTCTCGCCTGAGAATGTTCTTGGTGAGGGTGGATATGGGGTCGTTTATAAGGGAATTTTGATCAATGGGACTGAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATAGGCCATGTTCGACATAAGAATCTGGTGCGGCTTCTAGGATATTGTGTTGAAGGAGTTCACAGGATGCTGGTGTATGAGTATGTTAATAATGGTAACTTGGAACAATGGCTTCATGGAGGCATCAGCGAACATGCTACTCTTACTTGGGAAGCCCGTATGAAGGTTCTTCTTGGTACTGCAAAGGCGCTTGCATACTTGCACGAAGCTATAGAACCAAAAGTTGTTCACCGGGACATAAAATCTAGCAATATTTTGATTGACAATGAGTTTAATGGCAAGGTTTCTGATTTTGGGCTGGCGAAGCTCTTGGGTTCGGGCGAAAGTCACATAACTACCCGAGTGATGGGAACATTTGGTTATGTGGCCCCGGAATATGCCAACACTGGCTTGTTAAATGAAAAGAGTGACATTTATAGTTTTGGTGTTCTCCTGCTAGAAGCAGTAACTGGAAGGGACCCAGTGGACTATGGCCGCCCTGCTAGTGAGGTAAATCTTGTTGAGTGGCTGAAAATGATGGTGGGGAACAGAAGAGCCGAGGAAGTTATGGATCCAAACCTCGAACCAAAGCCCCCAACACGCGCTCTTAAACGATCTCTTCTGGTCGCGCTTAGGTGTGTTGATCCCGATTCCGAGAAAAGGCCCAAAATGAGTCAAGTTGTTCGTATGCTTGAGGCTGATGATTTCCCTTACCGCGAGGATCGAAGGAATAGAAAGAGCCGTACGGCCAGTATGGAAATCGAATCCATGAAGGAGAGTTGCAGCACTTCAGCCGACATCGAAAACAATGGAGGACAATCAGAGAGCCATATATCTGATAATAAAGGCCTAACAGACACGCTTGGTCGTGTTGATTAA

Network for GWHGAAZE001778

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	190	444	1.00E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.251
	SRR3591706	second leaf	16.676
	SRR3591707	mature leaf	8.268
	SRR3591708	Shoot apex	17.391
	SRR3591709	Stem	16.375
	SRR3591710	White floral bud	13.959
	SRR3591711	White flower	8.691
	SRR3591712	Green floral bud	27.463
	SRR3591713	Yellow flower	3.543
SRP173429	SRR8316895	Juvenile bud stage	9.248
	SRR8316896	Juvenile bud stage	9.891
	SRR8316897	Juvenile bud stage	5.842
	SRR8316894	Third green stage	6.392
	SRR8316900	Third green stage	17.649
	SRR8316901	Third green stage	15.204
	SRR8316898	Complete white stage	1.154
	SRR8316899	Complete white stage	13.745
	SRR8316903	Complete white stage	1.717
	SRR8316902	Silver flowering stage	0.700
	SRR8316904	Silver flowering stage	0.741
	SRR8316905	Silver flowering stage	0.359
	SRR8316906	Gold flowering stage	1.964
	SRR8316907	Gold flowering stage	0.941
	SRR8316908	Gold flowering stage	2.100
SRP132670	SRR6706286	Control	12.204
	SRR6706287	Light intensity 50%	10.989
	SRR6706288	Light intensity 20%	10.594
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.940
	CNS0095593	Slightly white alabastrum(diploid) 2	8.056
	CNS0095594	Slightly white alabastrum(diploid) 3	4.681
	CNS0095595	Whole white alabastrum(diploid) 2	5.480
	CNS0095596	Whole white alabastrum(diploid) 3	4.915
	CNS0095597	Whole white alabastrum(diploid) 4	3.704
	CNS0095598	Silvery flower (diploied) 1	6.546
	CNS0095599	Silvery flower (diploied) 2	6.547
	CNS0095600	Silvery flower (diploied) 3	3.650
	CNS0095601	Golden flower (diploid) 1	4.730
	CNS0095602	Golden flower (diploid) 2	2.996
	CNS0095603	Golden flower (diploid) 3	2.829
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.395
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.405
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.347
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.211
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.111
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.999
	CNS0095610	Silvery flower (tetraploid) 1	2.935
	CNS0095611	Silvery flower (tetraploid) 2	2.890
	CNS0095612	Silvery flower (tetraploid) 3	1.889
	CNS0095613	Golden flower (tetraploid) 1	0.553
	CNS0095614	Golden flower (tetraploid) 2	1.105
	CNS0095615	Golden flower (tetraploid) 3	0.378
CRA001975	CRR073297	Stem 1	19.261
	CRR073298	Stem 2	22.541
	CRR073299	Stem 3	20.079
	CRR073300	Leaf 1	32.202
	CRR073301	Leaf 2	36.266
	CRR073302	Leaf 3	29.503
	CRR073303	Juvenile bud 1	23.268
	CRR073304	Juvenile bud 2	12.063
	CRR073305	Juvenile bud 3	25.291
	CRR073306	Third green 1	1.461
	CRR073307	Third green 2	1.741
	CRR073308	Third green 3	2.123
	CRR073309	Second white 1	0.427
	CRR073310	Second white 2	0.589
	CRR073311	Second white 3	0.517
	CRR073312	Silver flowering 1	0.055
	CRR073313	Silver flowering 2	0.415
	CRR073314	Silver flowering 3	0.369
	CRR073315	Gold flowering 1	11.281
	CRR073316	Gold flowering 2	16.338
	CRR073317	Gold flowering 3	9.558
	CRR073318	Tawny withering 1	19.226
	CRR073319	Tawny withering 2	10.954
	CRR073320	Tawny withering 3	18.174