Detail information of GWHGAAZE001780


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007048869.10Calcium-activated outward-rectifying potassium channel, putative isoform 1 [Theobroma cacao]
Swissprottr|Q9SVV6|KCO6_ARATH9E-107Two-pore potassium channel 3
trEMBLtr|A0A061DKR2|A0A061DKR2_THECC0Calcium-activated outward-rectifying potassium channel, putative isoform 1 {ECO:0000313|EMBL:EOX93027.1}
TAIR10AT4G18160.13E-89Ca2+ activated outward rectifying K+ channel 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6057012460573272-
GWHAAZE00000001mRNA6057012460573272-
GWHAAZE00000001exon6057012460570304-
GWHAAZE00000001exon6057223960573272-
GWHAAZE00000001CDS6057223960573272-
GWHAAZE00000001CDS6057012460570304-
Transcript Sequence

Network for GWHGAAZE001780

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07885.17Ion_trans_21161945.80E-14
PF07885.17Ion_trans_22393075.80E-13
PF03283.14PAE31145.20E-48
PF03283.14PAE1493786.60E-72
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19882NOTUM Wnt signaling pathway map04310

Gene Ontology

GO term OntologyName
GO:0071805biological_processpotassium ion transmembrane transport
GO:0016020cellular_componentmembrane
GO:0016787molecular_functionhydrolase activity
GO:0005267molecular_functionpotassium channel activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE001780.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30123456789Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.633
SRR3591706second leaf1.873
SRR3591707mature leaf1.629
SRR3591708Shoot apex3.117
SRR3591709Stem3.830
SRR3591710White floral bud4.976
SRR3591711White flower2.444
SRR3591712Green floral bud4.879
SRR3591713Yellow flower1.908
SRP173429 SRR8316895Juvenile bud stage 2.585
SRR8316896Juvenile bud stage 3.006
SRR8316897Juvenile bud stage 0.983
SRR8316894Third green stage 1.208
SRR8316900Third green stage 2.375
SRR8316901Third green stage 2.226
SRR8316898Complete white stage 0.816
SRR8316899Complete white stage 2.147
SRR8316903Complete white stage 2.080
SRR8316902Silver flowering stage0.346
SRR8316904Silver flowering stage0.396
SRR8316905Silver flowering stage0.282
SRR8316906Gold flowering stage 1.074
SRR8316907Gold flowering stage 1.010
SRR8316908Gold flowering stage 0.675
SRP132670SRR6706286Control1.510
SRR6706287Light intensity 50%1.648
SRR6706288Light intensity 20%1.664
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.715
CNS0095593Slightly white alabastrum(diploid) 24.091
CNS0095594Slightly white alabastrum(diploid) 37.674
CNS0095595Whole white alabastrum(diploid) 24.655
CNS0095596Whole white alabastrum(diploid) 35.148
CNS0095597Whole white alabastrum(diploid) 46.907
CNS0095598Silvery flower (diploied) 15.406
CNS0095599Silvery flower (diploied) 25.154
CNS0095600Silvery flower (diploied) 32.532
CNS0095601Golden flower (diploid) 14.015
CNS0095602Golden flower (diploid) 22.946
CNS0095603Golden flower (diploid) 33.208
CNS0095604Slightly white alabastrum(tetraploid) 14.845
CNS0095605Slightly white alabastrum(tetraploid) 25.614
CNS0095606Slightly white alabastrum(tetraploid) 33.549
CNS0095607Whole white alabastrum(tetraploid) 17.561
CNS0095608Whole white alabastrum(tetraploid) 27.794
CNS0095609Whole white alabastrum(tetraploid) 33.175
CNS0095610Silvery flower (tetraploid) 11.819
CNS0095611Silvery flower (tetraploid) 21.744
CNS0095612Silvery flower (tetraploid) 32.437
CNS0095613Golden flower (tetraploid) 11.434
CNS0095614Golden flower (tetraploid) 21.176
CNS0095615Golden flower (tetraploid) 30.543
CRA001975CRR073297Stem 12.748
CRR073298Stem 22.339
CRR073299Stem 32.076
CRR073300Leaf 11.406
CRR073301Leaf 21.582
CRR073302Leaf 31.154
CRR073303Juvenile bud 10.500
CRR073304Juvenile bud 20.712
CRR073305Juvenile bud 31.531
CRR073306Third green 10.465
CRR073307Third green 21.474
CRR073308Third green 30.292
CRR073309Second white 10.242
CRR073310Second white 20.305
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.031
CRR073315Gold flowering 11.861
CRR073316Gold flowering 21.584
CRR073317Gold flowering 30.751
CRR073318Tawny withering 10.744
CRR073319Tawny withering 21.799
CRR073320Tawny withering 31.829