Gene detail

Detail information of GWHGAAZE001834

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082926.1	5.5999E-165	PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 24-like isoform X1 [Sesamum indicum]
COG	YP_761292.1	1E-13	putative licheninase
Swissprot	tr\|Q38857\|XTH22_ARATH	1E-135	Xyloglucan endotransglucosylase/hydrolase protein 22 (Precursor)
trEMBL	tr\|B9H805\|B9H805_POPTR	5E-159	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}
TAIR10	AT5G57560.1	6E-103	Xyloglucan endotransglucosylase/hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	62302561	62303675	-
GWHAAZE00000001	mRNA	62302561	62303675	-
GWHAAZE00000001	exon	62302561	62302963	-
GWHAAZE00000001	exon	62303083	62303276	-
GWHAAZE00000001	exon	62303394	62303675	-
GWHAAZE00000001	CDS	62303394	62303675	-
GWHAAZE00000001	CDS	62303083	62303276	-
GWHAAZE00000001	CDS	62302561	62302963	-

Transcript Sequence
>GWHTAAZE001838 ATGTTGTTCTTCTCTTGTTCAAAGCCCTCGGTAATGCTTCTACCTTGTATATTTCTGGCATGCCTAGTTGCTTCTTCGTATGCAAATTTCTATCAAGACGCACAAATCACATGGGGCGATCAACGCGCTAAGATACTCAACGGCGGTCAGCTTCTTACTCTATCTCTAGACCATGCTTCTGGAGCTGGGTTTCAGTCCAAGAATGAGTATCTATTTGGTAGATTTGACATGCAGCTCAAACTTGTACCAGGCAACTCTGCCGGCTCCGTAACCACCTTCTATTTATCTTCTCCAGGACCTGGGCACGATGAGATTGACTTTGAGTTCTTGGGAAACTCTTCGGGAAATCCGTACACCGTTCACACAAATGTTTATGCCCAAGGAAAAGGGGAGAAGGAACAACAATTCCATCTCTGGTTCGACCCCACAACAGCCTTCCACACATACTCAATCGTTTGGAACTCTCAACGTATAACTTTTTTGGTGGATAATATTCCCATAAGAGTATTTCACAACAGTGAAGCAATTGGGATTCCATTCCCAAAGAATCAACCCATGAGGGTGTATGCGAGCCTTTGGAATGCTGATGACTGGGCAACACAAGGTGGGCGAGTAAAGGCCGACTGGACTAAAGCACCTTTCGTAGCTTCTTATAGGAATTTCAAGATCAGTGCTTGTGCTTTATCAGCAGGTTCATCTTGTGGTTCAAAGACTACTGACTCTGCGAACACAGAAGCGTGGCAAACTCAAGAACTTGATGGTGCTGGGCGTAACAGACTTCGGTGGGTGCAAGCAAAGTACATGATCTACAACTACTGCAGTGACGTTAAACGCTTTACTCAGGGTCTTCCATCTGAATGTAAACGTTCTAGGTTCTAG

Network for GWHGAAZE001834

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00722.22	Glyco_hydro_16	31	211	3.00E-60
PF06955.13	XET_C	244	287	8.10E-19
PF00046.30	Homeodomain	52	103	1.80E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006073	biological_process	cellular glucan metabolic process
GO:0010411	biological_process	xyloglucan metabolic process
GO:0042546	biological_process	cell wall biogenesis
GO:0005618	cellular_component	cell wall
GO:0048046	cellular_component	apoplast
GO:0003677	molecular_function	DNA binding
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.729
	SRR3591706	second leaf	0.091
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.708
	SRR3591709	Stem	12.402
	SRR3591710	White floral bud	0.910
	SRR3591711	White flower	1.819
	SRR3591712	Green floral bud	0.366
	SRR3591713	Yellow flower	0.597
SRP173429	SRR8316895	Juvenile bud stage	2.183
	SRR8316896	Juvenile bud stage	0.930
	SRR8316897	Juvenile bud stage	16.149
	SRR8316894	Third green stage	1.058
	SRR8316900	Third green stage	3.522
	SRR8316901	Third green stage	5.473
	SRR8316898	Complete white stage	0.049
	SRR8316899	Complete white stage	7.160
	SRR8316903	Complete white stage	0.177
	SRR8316902	Silver flowering stage	1.424
	SRR8316904	Silver flowering stage	0.445
	SRR8316905	Silver flowering stage	0.723
	SRR8316906	Gold flowering stage	0.270
	SRR8316907	Gold flowering stage	1.623
	SRR8316908	Gold flowering stage	6.549
SRP132670	SRR6706286	Control	1.623
	SRR6706287	Light intensity 50%	3.693
	SRR6706288	Light intensity 20%	1.257
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.453
	CNS0095593	Slightly white alabastrum(diploid) 2	5.540
	CNS0095594	Slightly white alabastrum(diploid) 3	2.841
	CNS0095595	Whole white alabastrum(diploid) 2	2.691
	CNS0095596	Whole white alabastrum(diploid) 3	0.834
	CNS0095597	Whole white alabastrum(diploid) 4	1.416
	CNS0095598	Silvery flower (diploied) 1	14.104
	CNS0095599	Silvery flower (diploied) 2	9.020
	CNS0095600	Silvery flower (diploied) 3	5.674
	CNS0095601	Golden flower (diploid) 1	8.713
	CNS0095602	Golden flower (diploid) 2	3.851
	CNS0095603	Golden flower (diploid) 3	4.748
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.028
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.036
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.028
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.022
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.017
	CNS0095610	Silvery flower (tetraploid) 1	0.066
	CNS0095611	Silvery flower (tetraploid) 2	0.060
	CNS0095612	Silvery flower (tetraploid) 3	0.889
	CNS0095613	Golden flower (tetraploid) 1	1.145
	CNS0095614	Golden flower (tetraploid) 2	0.120
	CNS0095615	Golden flower (tetraploid) 3	0.241
CRA001975	CRR073297	Stem 1	1.197
	CRR073298	Stem 2	1.446
	CRR073299	Stem 3	4.263
	CRR073300	Leaf 1	2.664
	CRR073301	Leaf 2	4.729
	CRR073302	Leaf 3	1.171
	CRR073303	Juvenile bud 1	4.988
	CRR073304	Juvenile bud 2	3.325
	CRR073305	Juvenile bud 3	9.259
	CRR073306	Third green 1	4.217
	CRR073307	Third green 2	6.946
	CRR073308	Third green 3	4.760
	CRR073309	Second white 1	1.120
	CRR073310	Second white 2	0.745
	CRR073311	Second white 3	1.769
	CRR073312	Silver flowering 1	3.647
	CRR073313	Silver flowering 2	3.401
	CRR073314	Silver flowering 3	1.406
	CRR073315	Gold flowering 1	5.903
	CRR073316	Gold flowering 2	19.259
	CRR073317	Gold flowering 3	4.748
	CRR073318	Tawny withering 1	4.689
	CRR073319	Tawny withering 2	8.909
	CRR073320	Tawny withering 3	4.169