Gene detail

Detail information of GWHGAAZE001844

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009602931.1	2.31004E-81	PREDICTED: uncharacterized protein LOC104097994 isoform X2 [Nicotiana tomentosiformis]
trEMBL	tr\|A0A068VDD0\|A0A068VDD0_COFCA	5E-79	Coffea canephora DH200=94 genomic scaffold, scaffold_278 {ECO:0000313\|EMBL:CDP18716.1}
TAIR10	AT3G58830.1	7E-49	haloacid dehalogenase (HAD) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	62494509	62496022	-
GWHAAZE00000001	mRNA	62494509	62496022	-
GWHAAZE00000001	exon	62494509	62494540	-
GWHAAZE00000001	exon	62494845	62494934	-
GWHAAZE00000001	exon	62495344	62496022	-
GWHAAZE00000001	CDS	62495344	62496022	-
GWHAAZE00000001	CDS	62494845	62494934	-
GWHAAZE00000001	CDS	62494509	62494540	-

Transcript Sequence
>GWHTAAZE001848 ATGGAAAAAAAAATGCAGTCCAACTCGATTGCACCTAGGCACATCTGCCCTCACTATCCCATTCATCTAAACCCTTCTCTCAATTCTCAATCCCTCAGTCTTCATTTCTCCAAAAAGAAAACAACCCATAAAACCTATTTACAACAACCACCACCCCATTTACCCACCGCCAATTCTATCTACTACTCTCTAAGCAGTTGCAGTAAAGAGCAAGAACACAAAAACCACAACAACAACAACCCATCTTCTACAAATCACCAAACCCAACCTTTTCTTGAACAATTTTACTCTTCAGTCGAAACAAAGAGAACCCAGTTACCCCAAACCGAGGATCAAGAAGCTGAGGAGGAGATAGAGAGTGAGGGCATTTCGACAAACATGTGGTGGGCAGAAATGAAAGCGGCCATTGGGCAGAGAATCAATGTGGATGGGCTTGTTTGTGCTTTGGCGGTGGTAACTAGGGACAGGCAGTTGGTGATTCCTCATGTGTCTGTGAAAGATGTGAGGCATATTGATTGGGCTGAGTTGAAAAAGAATGGGTTTCAAGGTGTTGTGTTTGATAAAGATAATACTATTACTGCTCCTTATTCTTTGGCCTTGTGGGCACCTCTTGGTTCCTCTATGGAATGGTGTAAATCTGTTTTTGGTGATAATATTGCTGTTTTCAGTAACTCTTCTGGGCTCCAAGAGTATGACCCTGATGGTAGAAAAGCAAGAACACTTGAGAGTGCAATTGGGATCAAAGTTGTAAGGCATAGTAAGTGTTTTTTCTCTGAATCAACACCTCATCTCTCGGTTTGA

Network for GWHGAAZE001844

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09419.11	PGP_phosphatase	146	254	2.50E-27
PF00583.26	Acetyltransf_1	38	144	1.20E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GNAT

KEGG pathway

KO	Enzyme	pathway	mapID
K00621	GNPNAT1, GNA1	Metabolic pathways	map01100
		Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0008080	molecular_function	N-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.567
	SRR3591706	second leaf	56.659
	SRR3591707	mature leaf	21.287
	SRR3591708	Shoot apex	41.811
	SRR3591709	Stem	15.631
	SRR3591710	White floral bud	9.196
	SRR3591711	White flower	18.769
	SRR3591712	Green floral bud	17.871
	SRR3591713	Yellow flower	15.959
SRP173429	SRR8316895	Juvenile bud stage	8.741
	SRR8316896	Juvenile bud stage	12.422
	SRR8316897	Juvenile bud stage	10.131
	SRR8316894	Third green stage	6.251
	SRR8316900	Third green stage	22.906
	SRR8316901	Third green stage	14.028
	SRR8316898	Complete white stage	5.902
	SRR8316899	Complete white stage	17.376
	SRR8316903	Complete white stage	6.173
	SRR8316902	Silver flowering stage	5.704
	SRR8316904	Silver flowering stage	6.162
	SRR8316905	Silver flowering stage	4.896
	SRR8316906	Gold flowering stage	16.201
	SRR8316907	Gold flowering stage	15.592
	SRR8316908	Gold flowering stage	15.935
SRP132670	SRR6706286	Control	15.587
	SRR6706287	Light intensity 50%	17.812
	SRR6706288	Light intensity 20%	18.495
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.352
	CNS0095593	Slightly white alabastrum(diploid) 2	6.501
	CNS0095594	Slightly white alabastrum(diploid) 3	4.727
	CNS0095595	Whole white alabastrum(diploid) 2	8.274
	CNS0095596	Whole white alabastrum(diploid) 3	9.189
	CNS0095597	Whole white alabastrum(diploid) 4	7.182
	CNS0095598	Silvery flower (diploied) 1	8.361
	CNS0095599	Silvery flower (diploied) 2	9.219
	CNS0095600	Silvery flower (diploied) 3	16.358
	CNS0095601	Golden flower (diploid) 1	10.029
	CNS0095602	Golden flower (diploid) 2	11.726
	CNS0095603	Golden flower (diploid) 3	13.365
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.505
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.647
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.422
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.722
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.530
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.247
	CNS0095610	Silvery flower (tetraploid) 1	15.605
	CNS0095611	Silvery flower (tetraploid) 2	18.832
	CNS0095612	Silvery flower (tetraploid) 3	13.707
	CNS0095613	Golden flower (tetraploid) 1	10.149
	CNS0095614	Golden flower (tetraploid) 2	14.062
	CNS0095615	Golden flower (tetraploid) 3	7.229
CRA001975	CRR073297	Stem 1	12.681
	CRR073298	Stem 2	16.718
	CRR073299	Stem 3	13.270
	CRR073300	Leaf 1	14.689
	CRR073301	Leaf 2	12.612
	CRR073302	Leaf 3	13.755
	CRR073303	Juvenile bud 1	14.322
	CRR073304	Juvenile bud 2	14.206
	CRR073305	Juvenile bud 3	11.791
	CRR073306	Third green 1	3.519
	CRR073307	Third green 2	1.503
	CRR073308	Third green 3	2.138
	CRR073309	Second white 1	8.316
	CRR073310	Second white 2	6.729
	CRR073311	Second white 3	5.490
	CRR073312	Silver flowering 1	5.073
	CRR073313	Silver flowering 2	6.144
	CRR073314	Silver flowering 3	3.536
	CRR073315	Gold flowering 1	43.066
	CRR073316	Gold flowering 2	54.013
	CRR073317	Gold flowering 3	28.113
	CRR073318	Tawny withering 1	19.531
	CRR073319	Tawny withering 2	7.469
	CRR073320	Tawny withering 3	13.648