Gene detail

Detail information of GWHGAAZE001846

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265455.1	0	PREDICTED: cytochrome P450 CYP72A219 [Vitis vinifera]
COG	NP_354568.1	2E-32	cytochrome P450
Swissprot	tr\|H2DH21\|C7A29_PANGI	0	Cytochrome P450 CYP72A219
trEMBL	tr\|K4CGT3\|K4CGT3_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc07g062500.2.1}
TAIR10	AT3G14690.1	4E-131	cytochrome P450, family 72, subfamily A, polypeptide 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	62596564	62603259	+
GWHAAZE00000001	mRNA	62596564	62603259	+
GWHAAZE00000001	exon	62596564	62596828	+
GWHAAZE00000001	exon	62598626	62598840	+
GWHAAZE00000001	exon	62601635	62601879	+
GWHAAZE00000001	exon	62602214	62602430	+
GWHAAZE00000001	exon	62602837	62603259	+
GWHAAZE00000001	CDS	62596564	62596828	+
GWHAAZE00000001	CDS	62598626	62598840	+
GWHAAZE00000001	CDS	62601635	62601879	+
GWHAAZE00000001	CDS	62602214	62602430	+
GWHAAZE00000001	CDS	62602837	62603259	+

Transcript Sequence
>GWHTAAZE001850 ATGTACAACTCAGCTGCAGTGATTTGTGCTGTTCTAGTTGTACTTTTGGTATGGAGAGTGTTGAATTGGGTTTGGTTTAGGCCAAAAAAACTTGAGAAATTCCTCAGAGAGCAAGGACTCAATGGAAGTTCCTACAAAATCTTGTTTGGAGATTTTAAGAAAATCTCATCAATGATGAATGAAGCTGAATCTAGGCCCATCAGTCTTTCCAGTGATATAGTGCCACGTGTCATACCATGGGTACATGATGCCATCCAGAACTATGGTAATAATTGTTTCTTATGGATGGGGACAGTACCAAAGGTGTACATTATGGACCCTGAACTTATTAGAGAAGTGTTACATAATCCAGACATCTTCAGGAGGCCCAATACTCCAGTATTCAAGAAATTGGCCAATGGGCTTACAGCCCATGAGGGGGAGAAGTGGGACAAACACAGGAAAATCATTAACCCTGCTTTCCATGCAGAGAAGTTAAAGCACATGTTGCCAGCATTTTACTTGTGTTGTAGTGAACTCACCAGTACATGGGAGAAAAAGGTCTCTACGGAAGGGTCATGCGAGTTGGATGTATGGCCTTACCTAGAAACATTAACAAGTGATGTGATTTCGCGTACTGCTTTTGGGAGTAGTTACGAAGAAGGAAAAAATATATTTCGACTTCAAAAAGAACTAGTTGAGCTTGTAATCCAATCCTCGTTATCAGTTTCCTTCCCAGGATCCAGGTTCTTGCCAACTAAGAGGAACAGGAGAATGGAGGAAATTTGTAAAGAAGTAAACTTTTCATTGCAAAAAATTATTGATAAAAAAATGGTGACCATAACGAAAGGAGAAGCTAGTGATGACTTGTTGGGCATGCTATTGGAATCTAATATGAAAGAAACTGAACATGGGAGTAACAGTGTCGGAATGAGTATTAAAGATGTTATTGAAGAGTGTAAGGTAACTATGATCTTGTATGAAGTTTTAAGGTTATATTCACCCATAGCAGCACTTAATCGAAGTGTTTATAAAGATACTACACTAGGAGAAATGTCCCTACCAGCTGGTGTACAAGTAGGACTACCATTAATGCTAATTCACCATGACTATGATATATGGGGTGATGATGCAAAGGAGTTTAAACCAGAAAGATTTTCGAAAGGCGTATCAAATGCGACAAACAAAATGTCATTTTTCCCATTCAGCTCAGGACCCCGAGTATGTATTGGACAGAACTTTGCAATGTTGGAATCGAAAACGGCACTATCCATGATTTTGCAGTACTTCTCCTTCGAGCTTTCGACATCTTACACACATGCTCCTTTCAGTCTCATAACTCTTCAACCCCAATGCGGTGCTCAGTTGATTCTTCACAAGCTATAG

Network for GWHGAAZE001846

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	85	315	5.90E-28
PF00067.23	p450	316	428	1.10E-35
PF02701.16	zf-Dof	24	80	9.50E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0055114	biological_process	oxidation-reduction process
GO:0003677	molecular_function	DNA binding
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.665
	SRR3591706	second leaf	4.145
	SRR3591707	mature leaf	5.639
	SRR3591708	Shoot apex	4.079
	SRR3591709	Stem	20.899
	SRR3591710	White floral bud	5.863
	SRR3591711	White flower	10.284
	SRR3591712	Green floral bud	4.834
	SRR3591713	Yellow flower	1.602
SRP173429	SRR8316895	Juvenile bud stage	0.416
	SRR8316896	Juvenile bud stage	0.796
	SRR8316897	Juvenile bud stage	0.300
	SRR8316894	Third green stage	0.086
	SRR8316900	Third green stage	0.061
	SRR8316901	Third green stage	0.239
	SRR8316898	Complete white stage	0.206
	SRR8316899	Complete white stage	1.445
	SRR8316903	Complete white stage	0.404
	SRR8316902	Silver flowering stage	0.146
	SRR8316904	Silver flowering stage	0.025
	SRR8316905	Silver flowering stage	0.067
	SRR8316906	Gold flowering stage	0.181
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	1.419
SRP132670	SRR6706286	Control	0.443
	SRR6706287	Light intensity 50%	0.375
	SRR6706288	Light intensity 20%	0.203
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.202
	CNS0095593	Slightly white alabastrum(diploid) 2	1.255
	CNS0095594	Slightly white alabastrum(diploid) 3	1.389
	CNS0095595	Whole white alabastrum(diploid) 2	0.706
	CNS0095596	Whole white alabastrum(diploid) 3	0.176
	CNS0095597	Whole white alabastrum(diploid) 4	0.683
	CNS0095598	Silvery flower (diploied) 1	2.164
	CNS0095599	Silvery flower (diploied) 2	2.770
	CNS0095600	Silvery flower (diploied) 3	0.117
	CNS0095601	Golden flower (diploid) 1	3.796
	CNS0095602	Golden flower (diploid) 2	1.149
	CNS0095603	Golden flower (diploid) 3	1.160
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.039
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.127
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.064
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.120
	CNS0095610	Silvery flower (tetraploid) 1	0.549
	CNS0095611	Silvery flower (tetraploid) 2	0.513
	CNS0095612	Silvery flower (tetraploid) 3	0.831
	CNS0095613	Golden flower (tetraploid) 1	0.110
	CNS0095614	Golden flower (tetraploid) 2	0.047
	CNS0095615	Golden flower (tetraploid) 3	0.307
CRA001975	CRR073297	Stem 1	0.067
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.005
	CRR073301	Leaf 2	0.298
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.035
	CRR073306	Third green 1	0.009
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.002
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.002
	CRR073315	Gold flowering 1	5.513
	CRR073316	Gold flowering 2	5.988
	CRR073317	Gold flowering 3	2.106
	CRR073318	Tawny withering 1	3.727
	CRR073319	Tawny withering 2	6.811
	CRR073320	Tawny withering 3	3.738