Gene detail

Detail information of GWHGAAZE001848

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009617254.1	0	PREDICTED: cytochrome P450 CYP72A219-like [Nicotiana tomentosiformis]
COG	YP_003706560.1	2E-49	cytochrome P450
Swissprot	tr\|H2DH21\|C7A29_PANGI	0	Cytochrome P450 CYP72A219
trEMBL	tr\|A5BBR3\|A5BBR3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN67740.1}
TAIR10	AT3G14690.1	1E-169	cytochrome P450, family 72, subfamily A, polypeptide 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	62613332	62618631	+
GWHAAZE00000001	mRNA	62613332	62618631	+
GWHAAZE00000001	exon	62613332	62613596	+
GWHAAZE00000001	exon	62614222	62614240	+
GWHAAZE00000001	exon	62615232	62615445	+
GWHAAZE00000001	exon	62616943	62617187	+
GWHAAZE00000001	exon	62617523	62617901	+
GWHAAZE00000001	exon	62618209	62618631	+
GWHAAZE00000001	CDS	62613332	62613596	+
GWHAAZE00000001	CDS	62614222	62614240	+
GWHAAZE00000001	CDS	62615232	62615445	+
GWHAAZE00000001	CDS	62616943	62617187	+
GWHAAZE00000001	CDS	62617523	62617901	+
GWHAAZE00000001	CDS	62618209	62618631	+

Transcript Sequence
>GWHTAAZE001852 ATGAACAACTCAGTTGCAGTGATTTGTGCTGCTGTAGTTGTACTTTGGGCATGGAGATTGTTGAATTGGGTTTGGTTTAGGCCAAAAAAGCTTGAAAAATTCCTCAGAGAGCAAGGACTCAAAGGAAGTTCTTACAAGGTCTTGTTTGGAGATTTTAAGAAAATCTCATCAATGATGAGTGAAGCTAGATCTAAGCCCATCAGTCTTTCCAGTGATATAGTGCCACGTGTCACACCATGGATACATGATGCCATCAAGAACTATGGCACATTGTTGTCCATATCGCAAGAATTGTTTCTTATGGGAGGGACAGTACCAAGGGTGTGCATTACGGACCCGGAACTTATTAGAGAAGTGTTGCATAAGCCTGACATCTTCAAGAAGCATAGTATTCCAGCACTTAAGAAAATGGCAAATGGGATAACAGCCCATCAGGGAGAGAAGTGGGCCAAACACAGGAAAATCATTAACCCTGCTTTCCATGTGGAGAAGTTAAAGCATATGTTGCCAGCATTTTACTTGAGTTGTAGTGAACTCACAAGTACATGGGAGAAAATGGTCTCGACGGAAGGGTCGTGCGAGTTGGATGTATGGCCTTACCTAGAAACATTAACAAGCGATGTGATTTCGCGAACTGCTTTTGGGAGTAGTTACAAAGAAGGAAAAAATATATTTAGACTTCAAAAAGAACAAGTTGAGCTCGTAATCCAATCCTCATTTTCAGTTTCCTTCCCAGGATCCAGGTTCTTGCCAACAAAGAGGAACAGGAGAATGGAGGAAATTCGTAAAGAAGTGAACTTTTCTTTGCAAAAAATTATTGATAAGAAAATGGCGACGATAACAAAAGGGGAAGCTAGTGATGATTTATTAGGCATACTATTGGAATCTAATATGAAAGAAATTGAACATGGGAGTAAGAGTGGAGGAATGAGCATTAAAGATGTTATTGAAGAGTGTAAGGTATTTTATTTCGCTGGACAGGAAACTACGTCTGTTTTGTTGGTGTGGACTATGATTTTGTTAAGCATGAATCCGAATTGGCAAACAAAAGCCAGAGAAGAAGTTTTGCAAGTATTTGGAAATGACAAACCACATGTTGATGGGTTAAATCGCTTAAAGATTGTAACTATGATTTTGTACGAAGTTTTAAGGTTATATTCACCCGTACCAGCACTCAATCGAATTGTTTACAAAGATACTACACTAGGAGAAATGTCCCTACCAGCTGGTGTACTAGTAGGACTACCATTAATGCTAATTCACCATGACTATGATATATGGGGTGATGATGCAAAGGAGTTTAAACCAGAAAGATTTTCGGAAGGCATATCAAAGGCAACAAACAAAATGTCATTTTTCTCATTCAGCACAGGACCCCGAGTATGCATTGGACAGAACTTTGCAATGTTGGAAGCAAAAACGGCACTATCCATGATTTTGCAGAACTTCTCCTTCGAGCTTTCGACATCTTACACACATGCTCCTTTTAGTCTCATAACTCTTCAACCCCAATACGGTGCTCAGTTGATTCTTCACAAGCTATAG

Network for GWHGAAZE001848

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0083

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	101	492	6.40E-83
PF00091.26	Tubulin	128	289	5.70E-39
PF12327.9	FtsZ_C	339	419	5.20E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03531	ftsZ	Cell cycle - Caulobacter	map04112

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.442
	SRR3591706	second leaf	0.937
	SRR3591707	mature leaf	2.359
	SRR3591708	Shoot apex	0.290
	SRR3591709	Stem	1.675
	SRR3591710	White floral bud	0.497
	SRR3591711	White flower	1.697
	SRR3591712	Green floral bud	0.343
	SRR3591713	Yellow flower	2.053
SRP173429	SRR8316895	Juvenile bud stage	0.296
	SRR8316896	Juvenile bud stage	0.295
	SRR8316897	Juvenile bud stage	0.174
	SRR8316894	Third green stage	0.059
	SRR8316900	Third green stage	0.104
	SRR8316901	Third green stage	0.230
	SRR8316898	Complete white stage	0.559
	SRR8316899	Complete white stage	0.436
	SRR8316903	Complete white stage	0.313
	SRR8316902	Silver flowering stage	0.157
	SRR8316904	Silver flowering stage	0.253
	SRR8316905	Silver flowering stage	0.109
	SRR8316906	Gold flowering stage	1.322
	SRR8316907	Gold flowering stage	0.447
	SRR8316908	Gold flowering stage	2.321
SRP132670	SRR6706286	Control	0.306
	SRR6706287	Light intensity 50%	0.244
	SRR6706288	Light intensity 20%	0.188
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.311
	CNS0095593	Slightly white alabastrum(diploid) 2	0.200
	CNS0095594	Slightly white alabastrum(diploid) 3	0.480
	CNS0095595	Whole white alabastrum(diploid) 2	0.384
	CNS0095596	Whole white alabastrum(diploid) 3	0.010
	CNS0095597	Whole white alabastrum(diploid) 4	0.049
	CNS0095598	Silvery flower (diploied) 1	0.712
	CNS0095599	Silvery flower (diploied) 2	0.416
	CNS0095600	Silvery flower (diploied) 3	0.240
	CNS0095601	Golden flower (diploid) 1	0.666
	CNS0095602	Golden flower (diploid) 2	0.631
	CNS0095603	Golden flower (diploid) 3	0.651
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.116
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.133
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.177
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.015
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.128
	CNS0095610	Silvery flower (tetraploid) 1	0.715
	CNS0095611	Silvery flower (tetraploid) 2	0.431
	CNS0095612	Silvery flower (tetraploid) 3	0.639
	CNS0095613	Golden flower (tetraploid) 1	0.384
	CNS0095614	Golden flower (tetraploid) 2	1.172
	CNS0095615	Golden flower (tetraploid) 3	0.148
CRA001975	CRR073297	Stem 1	0.128
	CRR073298	Stem 2	0.057
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.008
	CRR073301	Leaf 2	0.059
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.002
	CRR073306	Third green 1	0.007
	CRR073307	Third green 2	0.004
	CRR073308	Third green 3	0.001
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.071
	CRR073312	Silver flowering 1	0.115
	CRR073313	Silver flowering 2	0.002
	CRR073314	Silver flowering 3	0.002
	CRR073315	Gold flowering 1	0.538
	CRR073316	Gold flowering 2	0.915
	CRR073317	Gold flowering 3	0.519
	CRR073318	Tawny withering 1	4.062
	CRR073319	Tawny withering 2	4.536
	CRR073320	Tawny withering 3	0.673