Gene detail

Detail information of GWHGAAZE001883

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010277038.1	3.41167E-86	PREDICTED: 14-3-3-like protein D [Nelumbo nucifera]
Swissprot	tr\|Q96453\|1433D_SOYBN	2E-84	14-3-3-like protein D
trEMBL	tr\|F6H2P0\|F6H2P0_VITVI	6E-86	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46258.1}
TAIR10	AT2G42590.2	3E-61	general regulatory factor 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	63693693	63694794	+
GWHAAZE00000001	mRNA	63693693	63694794	+
GWHAAZE00000001	exon	63693693	63694063	+
GWHAAZE00000001	exon	63694163	63694250	+
GWHAAZE00000001	exon	63694444	63694553	+
GWHAAZE00000001	exon	63694656	63694794	+
GWHAAZE00000001	CDS	63693693	63694063	+
GWHAAZE00000001	CDS	63694163	63694250	+
GWHAAZE00000001	CDS	63694444	63694553	+
GWHAAZE00000001	CDS	63694656	63694794	+

Transcript Sequence
>GWHTAAZE001887 ATGCATGTGTTCATTAATTTGGGGCATTTCATTCAAATCGATGTTTTTGTTTCTGTTTTGGTAGAATTGATGGGTGAGATGAAGAAAATAGCTAAACTCGATGTCGAATTGACTGTTGAGGAGCAGGATTTGCTTTGCGTTGGCTACACAAACTCGATTTCTCCTTGGTGGAATTCGTGGTGGATCCTATCTTTTATCATGCAAAAGGAAGAGAGGGAGGGTAATGAAGTTAATGCGAAATTAATCAAGGGGTACAGGGAGAAGGTTGAGTCTGAATTAGAGATGATTTGTAGTGATATTCTGGCTTTAATCGACGAGCATTTGATTCCATCATCTTCATCTGAAGAATCGGCTATATTTTTATATGATCTGAAAGGGAGTTACTACATGTATTTAGCAGAATTCAAGGGTGATATTGAGAGGAAGGAAGTTGTTGATCAGGCAATGAAAACATATCAGATAGCTACTACCAAAGCAGAGTCTTACTTCTCTCCTGCTCATCCCAGCCGGTTAAATTTGGCCTTGAATTTATCCGTCTTTTATTGTGACATCTTGAACAATCCAGAAAGGGGCTTCCACCTTGCTAAGCAAGCATTTGATGAGGCCATCGCGGACTTAGATAGCCTTAACGAGGAATTGTACAGAATTAGCACTTCAATCATGCAAATTCGTCGGAAGGACTTAATCTTACGGGCTTCAGGTAATTAG

Network for GWHGAAZE001883

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00244.21	2014/3/3	22	229	7.60E-65
PF00076.23	RRM_1	87	155	1.30E-15
PF13865.7	FoP_duplication	187	242	3.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12881	THOC4, ALY	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015
		MAPK signaling pathway - yeast	map04011
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		PI3K-Akt signaling pathway	map04151
		Cell cycle	map04110
		Oocyte meiosis	map04114
		NOD-like receptor signaling pathway	map04621
		Neurotrophin signaling pathway	map04722

Gene Ontology

GO term	Ontology	Name
GO:0019904	molecular_function	protein domain specific binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.231
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.164
	SRR3591710	White floral bud	0.094
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.227
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.282
	SRR8316896	Juvenile bud stage	0.657
	SRR8316897	Juvenile bud stage	0.468
	SRR8316894	Third green stage	0.284
	SRR8316900	Third green stage	0.508
	SRR8316901	Third green stage	0.708
	SRR8316898	Complete white stage	0.079
	SRR8316899	Complete white stage	0.073
	SRR8316903	Complete white stage	0.272
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.119
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.245
	SRR6706287	Light intensity 50%	0.571
	SRR6706288	Light intensity 20%	0.596
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.248
	CNS0095593	Slightly white alabastrum(diploid) 2	0.183
	CNS0095594	Slightly white alabastrum(diploid) 3	0.265
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.023
	CNS0095597	Whole white alabastrum(diploid) 4	0.087
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.064
	CNS0095600	Silvery flower (diploied) 3	0.082
	CNS0095601	Golden flower (diploid) 1	0.131
	CNS0095602	Golden flower (diploid) 2	0.380
	CNS0095603	Golden flower (diploid) 3	0.071
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.986
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.621
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.488
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.119
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.221
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.088
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.216
	CRR073298	Stem 2	0.101
	CRR073299	Stem 3	1.083
	CRR073300	Leaf 1	0.028
	CRR073301	Leaf 2	0.182
	CRR073302	Leaf 3	0.116
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.041
	CRR073306	Third green 1	0.118
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.014
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.145
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000