Gene detail

Detail information of GWHGAAZE001892

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAB66002.1	0	cofactor-independent phosphoglyceromutase [Apium graveolens]
COG	YP_004513631.1	6E-175	phosphoglycerate mutase
Swissprot	tr\|Q42908\|PMGI_MESCR	0	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
trEMBL	tr\|Q9SDL3\|Q9SDL3_APIGR	0	Cofactor-independent phosphoglyceromutase {ECO:0000313\|EMBL:CAB66002.1}
TAIR10	AT3G08590.2	0	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	63863338	63872164	+
GWHAAZE00000001	mRNA	63863338	63872164	+
GWHAAZE00000001	exon	63863338	63863499	+
GWHAAZE00000001	exon	63864466	63864593	+
GWHAAZE00000001	exon	63865325	63865475	+
GWHAAZE00000001	exon	63866093	63866296	+
GWHAAZE00000001	exon	63867421	63867845	+
GWHAAZE00000001	exon	63868855	63869047	+
GWHAAZE00000001	exon	63869167	63869262	+
GWHAAZE00000001	exon	63870619	63870774	+
GWHAAZE00000001	exon	63872003	63872164	+
GWHAAZE00000001	CDS	63863338	63863499	+
GWHAAZE00000001	CDS	63864466	63864593	+
GWHAAZE00000001	CDS	63865325	63865475	+
GWHAAZE00000001	CDS	63866093	63866296	+
GWHAAZE00000001	CDS	63867421	63867845	+
GWHAAZE00000001	CDS	63868855	63869047	+
GWHAAZE00000001	CDS	63869167	63869262	+
GWHAAZE00000001	CDS	63870619	63870774	+
GWHAAZE00000001	CDS	63872003	63872164	+

Transcript Sequence
>GWHTAAZE001896 ATGGGTAGCAGTGGATTCTCATGGAAATTGGAAGATCATCCAAAGCTACCAAAGGATAAGGTGGTGGCTGTGGTGGTTTTGGATGGATGGGGTGAAGCTCATGACAATCAATATAACTGTATTTCCGTTGCCGATACCCCCACCATGGATTCCCTTAAAAAGGGTGCTCCTGAAAAATGGAGATTGGTTAGGGCTCATGGGAAAGCCGTGGGGCTTCCAACAGAAGATGACATGGGCAACAGTGAAGTTGGTCACAATGCCCTTGGTGCCGGTCGGATATTTGCTCAAGGTGCAAAGCTCGTTGACCTTGCTCTTGCCTCTGGAAAAATATACGAAGGAGAAGGTTTTAATTATATTAAGGAATCTTTTGCAAGCGGCACTTTGCACCTCGTTGGGTTATTGAGTGATGGAGGTGTCCACTCCCGACTTGATCAGTTACAGTTGCTGCTAAAAGGTGCCAGTGAGCAAGGTGCTAAAAGAATCCGAGTTCATATTCTTACTGATGGTCGCGATGTTTTGGATGGTTCAAGTGTAGGCTTTGTGGAAACTCTTGAGAATGATCTCTCAGAATTACGTGGAAAAGGTGTTGATGCCCAAATTGCATCTGGTGGTGGTCGCATGTATGTTACCATGGACCGATATGAGAATGACTGGGAAGTTGTGAAACGAGGATGGGACGCTCAAGTTCTTGGCGAAGCCCCGTACAAGTTCAAGAGTGCCCTTGAAGCGGTCAAGGAACTAAGGGCGGTTCCCAAGGCCAATGATCAGTACTTACCCCCATTTGTTATTGTTGATGATAATGGCAAGGCTGTTGGGCCTGTAGTGGACGGTGATGCTGTAGTGACGATCAATTTCCGAGCAGATCGTATGGTTATGGCTGCAAAAGCTTTTGAGTATGAAGATTTTGATAAATTTGATCGAGTTAGAGTCCCTAAAATCCGTTACGCCGGAATGCTTCAATATGATGGAGAGTTGAAGCTTCCAAACAAATACCTTGTTTCTCCTCCAGAGATTGAAAGAACGTCTGGTGAATACTTGGTGCATAATGGTGTTCGTACTTTTGCATGCAGCGAGACTGTCAAATTTGGCCACGTCACCTTTTTCTGGAATGGAAACCGATCTGGATATTTCAACCCAGAAATGGAAGAGTATGTGGAAGTTCCAAGCGACAGTGGGATTACCTTCAATGTCAAGCCAAAGATGAAGGCCGTGGAAATTGCTGAGAAGGCCAGGGATGCCATCCTTAGCGGTAAATTTCAGCAGGTACGCGTTAACCTACCAAATGGAGACATGGTGGGGCATACGGGTGACATTGATGCCACAGTAGTGGCTTGTAAGGCTGCTGACGAAGCTGTCAAGATGATACTTGATGCAATTGAGCAAGTAGGCGGAATATACGTTGTTACTGCTGACCACGGGAACGCTGAAGACATGGTGAAAAGAAACAAGAAGGGGGATCCTCTTCTTGACAAGAATGGAAAAATTCAAATTCTTACTTCTCACACTCTTGAACCTGTTCCTATTGCAATTGGTGGGCCAGGGCTATCACCTGGTGTGAGATACCGCACGGACGTTCCCACTGGCGGGCTTGCTAACGTGGCAGCGACTGTGATGAACCTACATGGTTTTGTTGCACCAAGCGATTACGAGACAACCTTGATTGAGGTCGTCGATTAG

Network for GWHGAAZE001892

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01676.19	Metalloenzyme	20	543	2.80E-110
PF06415.14	iPGM_N	102	322	1.10E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15633	gpmI	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name
GO:0006007	biological_process	glucose catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0005515	molecular_function	protein binding
GO:0003824	molecular_function	catalytic activity
GO:0004619	molecular_function	phosphoglycerate mutase activity
GO:0030145	molecular_function	manganese ion binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	271.423
	SRR3591706	second leaf	127.018
	SRR3591707	mature leaf	99.444
	SRR3591708	Shoot apex	185.155
	SRR3591709	Stem	288.570
	SRR3591710	White floral bud	213.000
	SRR3591711	White flower	252.015
	SRR3591712	Green floral bud	242.509
	SRR3591713	Yellow flower	196.422
SRP173429	SRR8316895	Juvenile bud stage	131.904
	SRR8316896	Juvenile bud stage	178.783
	SRR8316897	Juvenile bud stage	78.023
	SRR8316894	Third green stage	82.243
	SRR8316900	Third green stage	277.973
	SRR8316901	Third green stage	268.575
	SRR8316898	Complete white stage	122.774
	SRR8316899	Complete white stage	275.468
	SRR8316903	Complete white stage	170.927
	SRR8316902	Silver flowering stage	167.537
	SRR8316904	Silver flowering stage	212.022
	SRR8316905	Silver flowering stage	93.770
	SRR8316906	Gold flowering stage	213.029
	SRR8316907	Gold flowering stage	305.626
	SRR8316908	Gold flowering stage	291.410
SRP132670	SRR6706286	Control	258.484
	SRR6706287	Light intensity 50%	285.260
	SRR6706288	Light intensity 20%	312.147
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	155.750
	CNS0095593	Slightly white alabastrum(diploid) 2	178.197
	CNS0095594	Slightly white alabastrum(diploid) 3	138.969
	CNS0095595	Whole white alabastrum(diploid) 2	165.687
	CNS0095596	Whole white alabastrum(diploid) 3	192.085
	CNS0095597	Whole white alabastrum(diploid) 4	146.514
	CNS0095598	Silvery flower (diploied) 1	114.222
	CNS0095599	Silvery flower (diploied) 2	125.270
	CNS0095600	Silvery flower (diploied) 3	238.902
	CNS0095601	Golden flower (diploid) 1	93.557
	CNS0095602	Golden flower (diploid) 2	185.538
	CNS0095603	Golden flower (diploid) 3	175.811
	CNS0095604	Slightly white alabastrum(tetraploid) 1	191.553
	CNS0095605	Slightly white alabastrum(tetraploid) 2	172.125
	CNS0095606	Slightly white alabastrum(tetraploid) 3	258.273
	CNS0095607	Whole white alabastrum(tetraploid) 1	141.570
	CNS0095608	Whole white alabastrum(tetraploid) 2	162.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	261.328
	CNS0095610	Silvery flower (tetraploid) 1	291.385
	CNS0095611	Silvery flower (tetraploid) 2	196.562
	CNS0095612	Silvery flower (tetraploid) 3	209.744
	CNS0095613	Golden flower (tetraploid) 1	125.712
	CNS0095614	Golden flower (tetraploid) 2	197.841
	CNS0095615	Golden flower (tetraploid) 3	113.529
CRA001975	CRR073297	Stem 1	263.540
	CRR073298	Stem 2	248.951
	CRR073299	Stem 3	249.236
	CRR073300	Leaf 1	350.897
	CRR073301	Leaf 2	336.187
	CRR073302	Leaf 3	334.365
	CRR073303	Juvenile bud 1	373.454
	CRR073304	Juvenile bud 2	337.972
	CRR073305	Juvenile bud 3	356.441
	CRR073306	Third green 1	208.424
	CRR073307	Third green 2	190.247
	CRR073308	Third green 3	213.715
	CRR073309	Second white 1	269.175
	CRR073310	Second white 2	199.082
	CRR073311	Second white 3	177.886
	CRR073312	Silver flowering 1	235.454
	CRR073313	Silver flowering 2	274.108
	CRR073314	Silver flowering 3	251.082
	CRR073315	Gold flowering 1	121.427
	CRR073316	Gold flowering 2	137.603
	CRR073317	Gold flowering 3	113.766
	CRR073318	Tawny withering 1	234.672
	CRR073319	Tawny withering 2	182.763
	CRR073320	Tawny withering 3	246.556