Gene detail

Detail information of GWHGAAZE001902

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009617254.1	0	PREDICTED: cytochrome P450 CYP72A219-like [Nicotiana tomentosiformis]
COG	YP_004674946.1	2E-50	cytochrome P450
Swissprot	tr\|H2DH21\|C7A29_PANGI	0	Cytochrome P450 CYP72A219
trEMBL	tr\|A1XEL4\|A1XEL4_TOBAC	0	CYP72A57 {ECO:0000313\|EMBL:ABC69414.1}
TAIR10	AT3G14690.1	1E-172	cytochrome P450, family 72, subfamily A, polypeptide 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	64073381	64079550	+
GWHAAZE00000001	mRNA	64073381	64079550	+
GWHAAZE00000001	exon	64073381	64073660	+
GWHAAZE00000001	exon	64074799	64075016	+
GWHAAZE00000001	exon	64075217	64075461	+
GWHAAZE00000001	exon	64077674	64078058	+
GWHAAZE00000001	exon	64079122	64079550	+
GWHAAZE00000001	CDS	64073381	64073660	+
GWHAAZE00000001	CDS	64074799	64075016	+
GWHAAZE00000001	CDS	64075217	64075461	+
GWHAAZE00000001	CDS	64077674	64078058	+
GWHAAZE00000001	CDS	64079122	64079550	+

Transcript Sequence
>GWHTAAZE001906 ATGAGAATGGATCTTGTGTACAACTCGTTTGGGGTGAGTTGTGCTTTGGTTCTAATTTTGTGGGGATGCAGAGTGTTGAATTGGATTTGGTTTAGGCCAAAGAAGATAGAAAAGTGTTTGAGAAAGCAAGGCCTCAAAGGGAAATCTTATAGAGTATTATACGGAGACTCGAAGGAGAGCGCAATAATGGTGAAAGAAGCTAACTCTAAGCCTATCAATATCTTTGATGATATTGTGCCTCGTGTTATGCCTTTTCTCCATAAAACCATCAACGTATATGGTAAAGCTTCGTTCATATGGTTTGGCTGGACACCAAGGGTGCTGATCATGGACACTAATCTTATAAAAGAAGTCTTTCTAAAGATTCATAGTTTTCAAAAGCAAAAAACAAGTCCCTTAGTGAAGTTGTTCATAAATGGATTAGCAATCTATGAGGGGGAAGTTTGGGAGAAACATAGAAAAATCATCAACCCTGCTTTCCATCAAGAAAAATTGAAGCATATGCTTCCGGCATTTTACTTGAGTTGCAGTGAGATGGTGAATAAATGGGAGAAGTTGGTCTCGACAAAGGGGTCATGTGAGTTTGACGTTTGGCCCTATATAGAAACCTTTACGAGTGATGTAATATCGCGTACCTCGTTTGGCAGTAGCTATGAAGAAGGGAAAATGATATTTGAACATCAGAAAGAACTCGCTGAGCTTGTGGGTCAGGTTTCACAGTCAGTATACATTCCAGGATGGAGGTATTTACCAACTAAGAATAACAAAAGGATGAGGAAACTTGCCCATGAAATTAAATTCTTGATCAGGAGTATAATTGACAACAAAATGAAGACAATGAAGCATGGTGAAGGTCGCAATGAAGACTTATTGGGCATATTATTGGAATCAAATTTCAAAGAAATCCAACCTCATGAAAACGAGAGTGATGCATTGAGCATTAGCGAAGTTATCGAAGAGTGCAAGCAATTCTATTTTGCGGGGCAAGCAACTACTTCATTATTGCTTGTATGGACAATGTTTTTATTGAGCATTCATCCAGATTGGCAAGAACGTGCTAGAGAAGAGGTCATGCAAGTATTTGGAAATGGAAAGCCGGATTTTGAGGGTTTAAATCGTCTAAAAATTGTTAGTATGATTTTGCATGAAGTTTTAAGGTTATACCCACCTTCAGTCATAATCCTTCGAAATGTTGAAAATGAAACCATCTTAGGAGAAATATCGCTGCCACCAGGGGTGCAGGTCATGATACCAACAATGCTACTTCACCGCGATCAGGAAATATGGGGTGATGATGCTAAGGAGTTTAATCCGGAGAGATTTTCTGAAGGTGTGTCCAAGGCAACAAAGGGGCGAATCGCATTTTTCCCATTTGGATGGGGATCGCGAATATGCATTGGGCTGAACTTTGCAATGCTTGAAGCGAAAATGGCTATGGCTATGATTTTACAAAGATTTTCTTTTGAGCTTTCATCAACATATGTCCATGCTCCCCATACTTCTGTATTACTTGAACCCCAATATGGTGTTCAATTGATTCTGCACACATTAAACTAG

Network for GWHGAAZE001902

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	87	506	4.50E-84
PF05875.13	Ceramidase	8	236	8.40E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04711	ACER3, YDC1	Metabolic pathways	map01100
K04711	ACER3, YDC1	Sphingolipid metabolism	map00600

Gene Ontology

GO term	Ontology	Name
GO:0006672	biological_process	ceramide metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016021	cellular_component	integral component of membrane
GO:0016811	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.224
	SRR3591706	second leaf	0.042
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	3.073
	SRR3591709	Stem	0.261
	SRR3591710	White floral bud	9.135
	SRR3591711	White flower	4.142
	SRR3591712	Green floral bud	26.421
	SRR3591713	Yellow flower	1.036
SRP173429	SRR8316895	Juvenile bud stage	8.653
	SRR8316896	Juvenile bud stage	8.095
	SRR8316897	Juvenile bud stage	10.380
	SRR8316894	Third green stage	6.671
	SRR8316900	Third green stage	36.708
	SRR8316901	Third green stage	31.524
	SRR8316898	Complete white stage	7.629
	SRR8316899	Complete white stage	34.003
	SRR8316903	Complete white stage	8.951
	SRR8316902	Silver flowering stage	0.560
	SRR8316904	Silver flowering stage	0.885
	SRR8316905	Silver flowering stage	0.554
	SRR8316906	Gold flowering stage	1.371
	SRR8316907	Gold flowering stage	1.652
	SRR8316908	Gold flowering stage	3.062
SRP132670	SRR6706286	Control	14.576
	SRR6706287	Light intensity 50%	14.774
	SRR6706288	Light intensity 20%	16.882
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.690
	CNS0095593	Slightly white alabastrum(diploid) 2	13.418
	CNS0095594	Slightly white alabastrum(diploid) 3	13.311
	CNS0095595	Whole white alabastrum(diploid) 2	17.796
	CNS0095596	Whole white alabastrum(diploid) 3	19.586
	CNS0095597	Whole white alabastrum(diploid) 4	22.473
	CNS0095598	Silvery flower (diploied) 1	1.133
	CNS0095599	Silvery flower (diploied) 2	3.434
	CNS0095600	Silvery flower (diploied) 3	6.281
	CNS0095601	Golden flower (diploid) 1	0.947
	CNS0095602	Golden flower (diploid) 2	1.027
	CNS0095603	Golden flower (diploid) 3	1.925
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.479
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.635
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.052
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.360
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.326
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.515
	CNS0095610	Silvery flower (tetraploid) 1	4.274
	CNS0095611	Silvery flower (tetraploid) 2	10.361
	CNS0095612	Silvery flower (tetraploid) 3	6.391
	CNS0095613	Golden flower (tetraploid) 1	0.895
	CNS0095614	Golden flower (tetraploid) 2	1.521
	CNS0095615	Golden flower (tetraploid) 3	0.860
CRA001975	CRR073297	Stem 1	5.082
	CRR073298	Stem 2	6.408
	CRR073299	Stem 3	3.345
	CRR073300	Leaf 1	10.809
	CRR073301	Leaf 2	9.298
	CRR073302	Leaf 3	7.998
	CRR073303	Juvenile bud 1	9.485
	CRR073304	Juvenile bud 2	8.368
	CRR073305	Juvenile bud 3	7.960
	CRR073306	Third green 1	0.479
	CRR073307	Third green 2	0.268
	CRR073308	Third green 3	0.202
	CRR073309	Second white 1	0.238
	CRR073310	Second white 2	1.049
	CRR073311	Second white 3	0.277
	CRR073312	Silver flowering 1	0.149
	CRR073313	Silver flowering 2	0.102
	CRR073314	Silver flowering 3	0.371
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.056
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000