Gene detail

Detail information of GWHGAAZE001934

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	H2DH21.1C7A29_PANGI	9.1658E-129	RecName: Full=Cytochrome P450 CYP72A219; AltName: Full=Cytochrome P450 CYP72A129 [Panax ginseng]
COG	YP_003706560.1	8E-40	cytochrome P450
Swissprot	tr\|H2DH21\|C7A29_PANGI	4E-131	Cytochrome P450 CYP72A219
trEMBL	tr\|M1APQ9\|M1APQ9_SOLTU	2E-127	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027494}
TAIR10	AT3G14680.1	5E-90	cytochrome P450, family 72, subfamily A, polypeptide 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	65046671	65047680	+
GWHAAZE00000001	mRNA	65046671	65047680	+
GWHAAZE00000001	exon	65046671	65046964	+
GWHAAZE00000001	exon	65047255	65047680	+
GWHAAZE00000001	CDS	65046671	65046964	+
GWHAAZE00000001	CDS	65047255	65047680	+

Transcript Sequence
>GWHTAAZE001938 ATGGAAGCAGGACAAGCAAGCTATCATGATGACTTATTAGGTATACTATTGGAATCCAATTTCAAAGAGATTCAACAACATGGGAATAAAAACTTTGGAATGACAATCAATGAAGTTGTTGAAGAGTGCAAGTTATTCTACTTTGCTGGACAGGAGACTACTTCTACTATGCTTGTTTGGACAATGATTCTACTGAGTCAATACCCATCTTGGCAAGAACATGCTAGAGAGGAGGTATTCGACGTTTTTGGGAATGCCAAACCAGATTTTGATGGGTTGAATCGCCTCAAAATTGTCAATATGATTTTCTACGAGGTTCTAAGGCTATATCCACCCGTACTTTCACTCATCCGAACAATTCATGAAGAAACAAAAGTGGGAGAAATATCCCTACCAGCTGGAGTGATTCTTGCATTACCGATTCTTCTAGTTCATTACGACAAGGAATTATGGGGTGATGACGCTAAGGAGTTCAAACCAGAAAGATTTTCCGAAGGTGTGTCAAAGGTAACAAAGGGGCAAGTCTCATTTTTCCCTTTTGGCTGGGGACCTCGAATCTGCATTGGACAAAACTTCGCAATGTTAGAAGCAAAAATGGCATTAGCTATGATTCTCCAAAGCTTCACCTTCAAACTTTCACCATCATATACACATGCTCCTCATACAGTCCTACTCCTTCAACCTCAACATGGAGCCCACTTAATTCTTCAAAAGCTTTAG

Network for GWHGAAZE001934

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0176

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	9	218	1.90E-56
PF00005.28	ABC_tran	113	263	3.10E-27
PF19055.1	ABC2_membrane_7	293	355	8.80E-09
PF01061.25	ABC2_membrane	412	624	4.00E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016020	cellular_component	membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.336
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.038
	SRR3591713	Yellow flower	0.170
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.073
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.096
	SRR8316905	Silver flowering stage	0.083
	SRR8316906	Gold flowering stage	0.392
	SRR8316907	Gold flowering stage	0.244
	SRR8316908	Gold flowering stage	0.187
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.020
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.185
	CNS0095602	Golden flower (diploid) 2	0.548
	CNS0095603	Golden flower (diploid) 3	0.317
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.086
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.063
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.078
CRA001975	CRR073297	Stem 1	0.033
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.063
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.204
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.191
	CRR073308	Third green 3	0.074
	CRR073309	Second white 1	0.290
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	3.109
	CRR073312	Silver flowering 1	0.090
	CRR073313	Silver flowering 2	0.499
	CRR073314	Silver flowering 3	0.037
	CRR073315	Gold flowering 1	0.016
	CRR073316	Gold flowering 2	0.007
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.309
	CRR073319	Tawny withering 2	0.292
	CRR073320	Tawny withering 3	0.026